Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I19
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 28 1.3
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 1.8
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 2.3
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.3
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.3
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 26 4.1
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 4.1
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 26 5.4
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 5.4
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 7.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 9.5
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 330 STQIEGEPE--LGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSP 458
+ +I+G PE LGC Y++ N +NL V K Y+A + P
Sbjct: 366 AAKIDGVPEYALGCHNYLNLPNIANLLVNPRTGKHGYVAKFYLEP 410
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -2
Query: 559 SDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGLGNAMAMYRDLFFMNPTSRLEKLYV 380
S+ K +A + PSKV VN+LS F N +MYR + NP ++ ++
Sbjct: 364 SERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSI--SNPLHLVDSQHL 421
Query: 379 LTYSKQPSSGSP 344
+++ +P
Sbjct: 422 SPLNRKTHFNNP 433
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 393 RNCMCLHILSNLALVH-LQFVWNDCFLW 313
RN LH S VH L +W++CFL+
Sbjct: 351 RNLKNLHYNSKKEFVHDLMLIWSNCFLY 378
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 501 HTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREET 641
HT + + LE+ ++ + ++ + +A D+FKA F+E T
Sbjct: 532 HTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGLDIFKAAFKEFT 578
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 2.3
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 324 SH-STQIEGEPELGCLEYVSTYNFSNLDVGFMK---NKSLYIAIAFPSPKILNLNVFDKL 491
SH S +I+ G L ++ +N NLDV + K L + ++F +++ L
Sbjct: 511 SHRSKEIDYYHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGL 570
Query: 492 LTVHTFEGLLKNLEDADFTLVSEDGEKFR 578
+ FEG +KN +FT+ + E FR
Sbjct: 571 KELLLFEGDVKNTYGLNFTINLKAVEGFR 599
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 240 ETEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMK 419
E I K+++I R T + +YK +HS ++G CLE + ++ + V F
Sbjct: 261 EESIPKEERIPRFTAASWKYKSGAVGILAHSIILQGTNYDTCLELQADGHYVRM-VDFYG 319
Query: 420 NKSLYI 437
LYI
Sbjct: 320 QPRLYI 325
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 376 TYSKQPSSGSPSICVE*LFSLVFSNLYSFS 287
+YS++P SPS ++ FS V S L FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 81 PNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSETEIDKK 260
P + D + D + + E + I L I++ +GS + + + D
Sbjct: 15 PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74
Query: 261 QKIVRLTKSLKEYKFENTR-ENSHSTQIEG 347
Q+++ KSL E FE R E + + ++G
Sbjct: 75 QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 243 TEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVG 410
++ID ++ R K ++ K +N R ++ + E +YV +NF N VG
Sbjct: 291 SKIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 465 LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMF 629
L L +K++ VH F + + F+ V + EKF K LAA + +++F
Sbjct: 996 LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 24 KTCAAKWLCIENVYQKF 74
KTC + W C NV KF
Sbjct: 698 KTCTSIWQCDHNVVSKF 714
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,684
Number of Sequences: 5004
Number of extensions: 62659
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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