Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I18
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.5  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/61 (21%), Positives = 24/61 (39%)
 Frame = +2

Query: 560 FVNLDTVYLRITVMHSNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLA 739
           +VNL    L +   H     +I Y+  W  +      ++P+   N        +N+ FL 
Sbjct: 6   WVNLALFCLHVQHSHGATDKVICYVASWAIYRPDKGEYHPK---NIDPNICTHINYAFLG 62

Query: 740 L 742
           +
Sbjct: 63  V 63


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 661 PGREVYPTHYVRYYVY 614
           P   VY  HY RY+ Y
Sbjct: 164 PPPPVYTHHYARYHPY 179


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 380  TSLEVISNIQHPDIVQLVPPSIE 448
            TS+ V +N QH  +V   PP+ E
Sbjct: 1000 TSIRVETNDQHSLVVYWKPPARE 1022


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,306
Number of Sequences: 336
Number of extensions: 3964
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)