Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I18
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 78 7e-15
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 37 0.016
07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539... 31 0.79
03_02_0462 + 8669049-8669136,8669922-8670046,8670227-8670437,867... 29 3.2
06_03_0587 + 22555414-22557231 29 4.2
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928... 29 5.6
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 5.6
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 28 7.4
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 28 7.4
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 28 7.4
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 7.4
12_02_0727 - 22564183-22564815,22564906-22565073,22565264-225653... 28 9.8
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 28 9.8
06_02_0215 - 13145544-13146482,13148797-13149297 28 9.8
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 78.2 bits (184), Expect = 7e-15
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +2
Query: 614 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLALNIMGFTMYSLXNCGLY 790
+ ++ ++GW+ F AWS SFYPQ+++NFKRKSV GLNFDFL LN+ + Y + N L+
Sbjct: 9 MEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKSVVGLNFDFLVLNLTKHSSYLIYNAALF 67
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 635 MGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLALNIMGFTMYSLXNCGL 787
+G + +W V+ PQI N+K KS GL+ FL I+G ++L C L
Sbjct: 43 LGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTWIVG-DFFNLIGCFL 92
>07_03_0368 +
17351199-17351351,17352166-17352243,17353774-17353927,
17353997-17354019,17354242-17354319,17354407-17354466,
17354745-17354805,17355080-17355243
Length = 256
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 614 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLALNIMGFTM 763
+ ++S I+G+ AA ++ PQI K SV GL+ L ++G+T+
Sbjct: 55 LRLMSKILGYHVVAASAIGKLPQILKILKHGSVRGLSVASFELEVVGYTI 104
>03_02_0462 +
8669049-8669136,8669922-8670046,8670227-8670437,
8670515-8670752,8671004-8671154,8671353-8671718
Length = 392
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 371 QYNTSLEVISNIQHPDIVQLVPPSIE 448
++ T + VISN++HP++V+L+ +E
Sbjct: 95 EFLTEINVISNVRHPNLVKLIGCCVE 120
>06_03_0587 + 22555414-22557231
Length = 605
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 520 GTFGSDVQCYTARFCQ--LRHSVPTYNRHALQRNKHNIVHNGL 642
GT G+ VQ R + L S+P RH Q K N+ HN L
Sbjct: 556 GTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 598
>05_03_0340 +
12691974-12692155,12692248-12692312,12692816-12692861,
12692959-12693057,12693722-12693755,12694489-12694618,
12694795-12694855,12695495-12695591,12696843-12697022,
12697120-12697233,12697283-12697396
Length = 373
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 241 EAYSMTRNRARGCSRPQYC 185
E+Y RN+ARGCS YC
Sbjct: 182 ESYCHRRNQARGCSVENYC 200
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 335 EETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 436
EET LLK+V+ NTS SN QH +V+ +P
Sbjct: 606 EETPLLKMVE----NTSSFSFSNEQHSKVVECIP 635
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 327 RFRSVTSTYILSNWECALGIPKINITTKQKRIL*LEIEHAAARGLNTALHS 175
R S T T L +C LG+ + + + + +EI H+ A GLN L++
Sbjct: 235 RSTSFTETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYA 285
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 251 VMLILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQL 430
V L+ + + L ++ V ++ L+ E R + + +I + LE+ +IQH ++ L
Sbjct: 407 VSLVNLLKEGNRDLSELANLVQEIKRLLSERREVLVTKIHRSQNGLEIFRSIQHKNLANL 466
Query: 431 V 433
V
Sbjct: 467 V 467
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 499 MRVRKESGTFGSDVQCYTARFCQLRHSVPTY 591
M+++ SG FG DV+ Y C + + P Y
Sbjct: 217 MKLKVSSGEFGLDVEDYLTGLCFMSNDFPRY 247
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 284 SQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSL-EVISNIQHPDIVQLVPPSIEIP 454
+ LD + +LN+ + ++Q Q N + +SN+ H D V ++PP I +P
Sbjct: 322 TMLDSSDFSLKNLNISPDILSSSYVMQQWQKNAPVWNGLSNVVHGDHVPMIPPGINLP 379
>12_02_0727 -
22564183-22564815,22564906-22565073,22565264-22565382,
22565796-22565898,22566702-22566974,22567088-22567279,
22568289-22568615
Length = 604
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 389 EVISNIQHPDIVQLVPPS-----IEIPGSNEPNKTVVISYDICAYGKSPGH 526
E S+ Q D QL PP + +P S+EPN T ++ A ++P H
Sbjct: 506 EPSSSSQSQDPPQLYPPGRIMHMVGLPSSSEPNSTSEQGEEVVALYETPRH 556
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 227 HRIRFCLVVMLILGIPSAHSQLDKMYVEVTDLNLLVEE-TRLLKLVQIGQYNTSLEVISN 403
HR L M I+G P+ S LD Y V NL++++ L +L + G T EV+
Sbjct: 723 HRAFASLTEMKIVGCPNITSLLDFRYFPVLK-NLIIQDCPELNELQEDGHLTTLTEVL-- 779
Query: 404 IQH 412
I+H
Sbjct: 780 IEH 782
>06_02_0215 - 13145544-13146482,13148797-13149297
Length = 479
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 176 ECSAVLRPRAAA---CSISSHRIRFCLVVMLILGIPSAHSQLDKMYVEVTDLNLLVEETR 346
+ SAV+R AAA ++ R R+ L V+ G+ + HS ++ ++ NLL+ E
Sbjct: 102 DLSAVVRAAAAARPSALPAAQRKRWMLQVLE--GVAACHSA-GVVHRDLKPANLLISEDG 158
Query: 347 LLKLVQIGQ 373
+LK+ +GQ
Sbjct: 159 VLKVADLGQ 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,178,060
Number of Sequences: 37544
Number of extensions: 379883
Number of successful extensions: 935
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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