Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I18
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48045-5|CAD56564.1| 374|Caenorhabditis elegans Hypothetical pr... 101 8e-22
Z48045-4|CAA88102.2| 404|Caenorhabditis elegans Hypothetical pr... 101 8e-22
AC024781-2|AAK39328.2| 311|Caenorhabditis elegans Hypothetical ... 41 9e-04
L16559-1|AAA27934.2| 397|Caenorhabditis elegans Hypothetical pr... 31 0.71
U40412-1|AAA81395.1| 570|Caenorhabditis elegans Temporarily ass... 30 1.7
Z49966-5|CAA90245.1| 445|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z48045-5|CAD56564.1| 374|Caenorhabditis elegans Hypothetical
protein C41C4.7b protein.
Length = 374
Score = 101 bits (241), Expect = 8e-22
Identities = 42/76 (55%), Positives = 60/76 (78%)
Frame = +2
Query: 563 VNLDTVYLRITVMHSNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLAL 742
++L+ + RITV+ S+ + I+ I+GW YF AWS+SFYPQ+Y+NFKRKSV GLNFDFL+L
Sbjct: 108 LDLEDAFARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSL 167
Query: 743 NIMGFTMYSLXNCGLY 790
N++GF Y++ N +Y
Sbjct: 168 NLVGFCAYAIFNLLMY 183
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 611 EINIISYI--MGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLALNIMGFTM 763
+I ++S++ + +I A ++PQ Y N+ RKS G + + L+ G T+
Sbjct: 261 KIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTL 313
>Z48045-4|CAA88102.2| 404|Caenorhabditis elegans Hypothetical
protein C41C4.7a protein.
Length = 404
Score = 101 bits (241), Expect = 8e-22
Identities = 42/76 (55%), Positives = 60/76 (78%)
Frame = +2
Query: 563 VNLDTVYLRITVMHSNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLAL 742
++L+ + RITV+ S+ + I+ I+GW YF AWS+SFYPQ+Y+NFKRKSV GLNFDFL+L
Sbjct: 108 LDLEDAFARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSL 167
Query: 743 NIMGFTMYSLXNCGLY 790
N++GF Y++ N +Y
Sbjct: 168 NLVGFCAYAIFNLLMY 183
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 611 EINIISYI--MGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLALNIMGFTM 763
+I ++S++ + +I A ++PQ Y N+ RKS G + + L+ G T+
Sbjct: 261 KIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTL 313
>AC024781-2|AAK39328.2| 311|Caenorhabditis elegans Hypothetical
protein Y43H11AL.2 protein.
Length = 311
Score = 41.1 bits (92), Expect = 9e-04
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +2
Query: 611 EINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVXGLNFDFLALNIMGFT 760
++ ++ +I+G I A W + +PQ++ N+K K GL+ FL ++G T
Sbjct: 37 DLKLLGFIIGLISLALWLIPLFPQLWQNYKTKKCEGLSLAFLFFWLVGDT 86
>L16559-1|AAA27934.2| 397|Caenorhabditis elegans Hypothetical
protein C06E1.3 protein.
Length = 397
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = -1
Query: 378 LYWPIWTSLSSRVSSTNRFRSVTSTYILSNWECALGIPKINITTKQKRIL 229
L +P W S S + + +FR ++ IL+ +G+ K+N+T K +R+L
Sbjct: 71 LIYPCWASGSQMIYT--QFRGHSNERILAKIGVEIGLQKVNVTLKFERLL 118
>U40412-1|AAA81395.1| 570|Caenorhabditis elegans Temporarily
assigned gene nameprotein 257 protein.
Length = 570
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 377 NTSLEVISNIQHPDIVQLVPPSIEIPGSNEPNKTVVISYDICAY 508
+ ++++ +QH +I+QL S E SN K IS + C +
Sbjct: 81 DNEIDMMKKLQHENIIQLFDASAESRSSNRSVKEYKISMEYCKF 124
>Z49966-5|CAA90245.1| 445|Caenorhabditis elegans Hypothetical
protein F35C11.5 protein.
Length = 445
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 179 CSAVLRPRAAACSISSHRIRFCLVVMLILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKL 358
C AVLR + + S F ++ +L+L S L MY V VEE + L++
Sbjct: 369 CRAVLRHSSDVLASRSVTRNFIIIALLVLAAASVGFGLFFMYTRVAGERKKVEEGKYLQI 428
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 218 ISSHRIRFCLVVMLILGIPSAHSQLDKMYVEVTDLNLLV 334
I+ + + ++V++++ I S H+Q+++M + LNL V
Sbjct: 442 IAFNFVAIVILVIILVSILSLHAQIERMQASQSGLNLFV 480
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +2
Query: 218 ISSHRIRFCLVVMLILGIPSAHSQLDKMYVEVTDLNLLV 334
I+ + + ++V++++ I S H+Q+++M + LNL V
Sbjct: 445 IAFNFVAIVILVIILVSILSLHAQIERMQASQSGLNLFV 483
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,455
Number of Sequences: 27780
Number of extensions: 346708
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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