Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I18
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 392  VISNIQHPDIVQLVPPSIEIPGSNEPNKTVV 484
            V++N+Q   + QL   +  + GSN+   T V
Sbjct: 1558 VVTNLQPSSVYQLKVETHNVAGSNQAEFTFV 1588


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 392  VISNIQHPDIVQLVPPSIEIPGSNEPNKTVV 484
            V++N+Q   + QL   +  + GSN+   T V
Sbjct: 1554 VVTNLQPSSVYQLKVETHNVAGSNQAEFTFV 1584


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 LLVEETRL-LKLVQIGQYNTSLEVISNIQHPDIVQLVPPSIEIP 454
           +L  E R+  K+ Q G Y  ++  I N  +  + QLV  +  IP
Sbjct: 210 ILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIP 253


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 LLVEETRL-LKLVQIGQYNTSLEVISNIQHPDIVQLVPPSIEIP 454
           +L  E R+  K+ Q G Y  ++  I N  +  + QLV  +  IP
Sbjct: 210 ILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIP 253


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 580 VPTYNRHALQRNKHNIVHNGLDILRGLVSFVL 675
           +P YN H L+ + + +   G  +  GL  FVL
Sbjct: 380 LPLYNLHTLELSDNKLRTVGAQLFNGL--FVL 409


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 188 VLRPRAAACSISSHRIRFCLVVM 256
           VLRP    C I      FC  V+
Sbjct: 713 VLRPTDIVCGIQRFAAGFCFTVV 735


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,253
Number of Sequences: 438
Number of extensions: 4708
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)