Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I17
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 31 0.22
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 29 0.68
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 28 1.2
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 28 1.6
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 27 2.8
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.8
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 3.6
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 27 3.6
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 3.6
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 4.8
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 26 6.4
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 8.4
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 30.7 bits (66), Expect = 0.22
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = -3
Query: 626 WYSCWNDRH---FS*QDSSFSADPSWGPTVWMIYLAGKL*PPVTL---ASPVGHPPIESH 465
W + W++R+ F +S A P W V + + PP ++ A P G PP S+
Sbjct: 13 WVAQWDERYKCYFYVNESDPKAKPQWECPVRGLTIP----PPPSVDHSAPPSGPPPSYSN 68
Query: 464 SACKKGPAARC-MAPSTPPPAFS 399
SA PAA A P PA S
Sbjct: 69 SAAPATPAASASSAAPAPAPAAS 91
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 256 STTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGV 420
+T +KE E T+KNK+ ++ + + K + KL+ + I GGG+
Sbjct: 3 TTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGG---GGGGL 54
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 202 VDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLE 366
+D S YL++ + ++S + ++ L + K ++ K KSIS+ K +I +LE
Sbjct: 220 IDSSSNYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATK-HKNEIFQLE 273
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 479 PIESHSACKKGPAARCMAPSTPPPAFSLELA-AFTIASISSLVMSPLKIETRSEMDL 312
P ES ++ G + PS+PPP FS E A A I L L +E DL
Sbjct: 16 PFESENS-SLGATPLSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEEGEDL 71
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 223 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG 348
+NK++ + + K+ T L+ + K N+ +N ++E + F G
Sbjct: 242 VNKARSVSNAKAPTSALRALLEHKENSSQNGPLAENFATFSG 283
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 223 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRL 402
L KS G K S K ++ + + E+N+ + V + + ITKLE + V ++
Sbjct: 355 LEKSIGDTLKSSIRSSPKSKKRSREDFEENEDYNAMVPVKRSRITKLESE--VYYEKRKV 412
Query: 403 KAGGGV 420
+A GG+
Sbjct: 413 RALGGI 418
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 241 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDIT 357
+++ TD+ K K++I + + +ISE++S FK +T
Sbjct: 245 VETANFLTDEEKTLAKMRIENDSSSAISEKLS-FKQSLT 282
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 265 DDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGG 414
+ ++E E T+KNK+ + + KG + KL + + S K G
Sbjct: 5 EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEG 54
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +1
Query: 241 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKL 363
++S K ++L+E ++K+ E+N S+ +++S KG++ L
Sbjct: 652 LESLKRENEELRE--QLKVEHEENISMQKQLSELKGELNTL 690
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 190 DLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTE 306
D+ + S + K+ GIDSKKS T + E + I+ E
Sbjct: 875 DVSDTSDRSPFSFKAFGIDSKKSPTPEPTEMAESNISEE 913
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 217 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAI 378
K++ + + I D K+ EKIK+ +KNK V++++ +I + DA+
Sbjct: 150 KHMREFEQIKKSAMRYDRQKQKEKIKMVEQKNKRNLYLVNVWEREILRNWPDAL 203
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.4
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Frame = +1
Query: 205 DPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVN 384
D W KY + + K ++ DL + + ++ SI+E ++ +I I ++
Sbjct: 9 DYWKKYFSNKKKPTVKNTSDIDLLHINRGRQPFDEGLSINEDSFFYRHNIHVPRIVYLII 68
Query: 385 AANSRLKAGGGVDGAIHRAAGPFLQAECD----SIGGCPTGDAKVTGGYNLPAKYIIHTV 552
A GG++ AI A G + + E + +GDA VT Y + ++
Sbjct: 69 VACGSFIITGGIEFAI--AYGMYKKTETSVRLWRLPDTLSGDAAVTNFVQAIVTYWVESI 126
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 295 INTEKNKSISERVSIFKGDITKLEIDAIVNAANSRL---KAGGGVDGAIHRAAG 447
++T +S SERV ++ +ID ++ A N +L +GG A AAG
Sbjct: 27 LSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGAAAAAAPAAAG 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,047
Number of Sequences: 5004
Number of extensions: 61176
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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