Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I17
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-4|CAA97408.1| 203|Caenorhabditis elegans Hypothetical pr... 145 3e-35
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ... 33 0.28
Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 29 2.6
AL132876-29|CAF31497.1| 840|Caenorhabditis elegans Hypothetical... 29 3.4
AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical... 29 3.4
AF045644-3|AAC02602.2| 205|Caenorhabditis elegans Hypothetical ... 29 4.5
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 28 5.9
>Z73102-4|CAA97408.1| 203|Caenorhabditis elegans Hypothetical
protein B0035.3 protein.
Length = 203
Score = 145 bits (351), Expect = 3e-35
Identities = 82/157 (52%), Positives = 97/157 (61%), Gaps = 8/157 (5%)
Frame = +1
Query: 280 FEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAG-PFL 456
FEK K+ K++ R+S++ GDITKL +DAIVNAANSRL GGGVDGAIHRAAG L
Sbjct: 13 FEKFKVA----KNVLGRISVWDGDITKLSVDAIVNAANSRLAGGGGVDGAIHRAAGRKQL 68
Query: 457 QAECDSIGGCPTGDAKVTGGYNL-PAKYIIHTVGPQ------DGSAEKLESCYEKCLSFQ 615
Q EC GC GDA +T G N+ K IIHTVGPQ D E L +CY L
Sbjct: 69 QEECQQYNGCAVGDAVITSGCNINHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIA 128
Query: 616 QEYQIKSIAFPCISTGIYGFPNRLAAHIALRTARKFL 726
E +KSIAF CISTG+YG+PN AA ++L
Sbjct: 129 IENGMKSIAFCCISTGVYGYPNDDAAKTVTNFLTEYL 165
>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
protein R155.3 protein.
Length = 1165
Score = 32.7 bits (71), Expect = 0.28
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Frame = +1
Query: 214 SKYLNKSQGIDSKKSTTDDLKEFEKIKINTE----KNKSIS--ERVSIFK-----GDITK 360
+ Y+N + +K + TD LK+FEKI +++ + IS +++ FK GD+ K
Sbjct: 433 TSYINSVK--KTKHAETDALKDFEKIGLHSRVIGTATRGISNMQKLVDFKDLADIGDLVK 490
Query: 361 LEIDAIVNAAN----SRLKAGGGVDGAIHRAAG 447
E++ + + N + LKA G++G + A+G
Sbjct: 491 SEVEKVKDQLNDENVANLKALAGIEGQLKTASG 523
>Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical
protein F55B12.1 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 217 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 309
K N+ GID +KS+ DD + K+K N K
Sbjct: 15 KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 217 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 309
K N+ GID +KS+ DD + K+K N K
Sbjct: 15 KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45
>AL132876-29|CAF31497.1| 840|Caenorhabditis elegans Hypothetical
protein Y105E8A.7b protein.
Length = 840
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 121 HFGREYRNNSLGRRFHGNY*FSTDLENVDPWSKYLNKSQGIDSKKSTTDDLK 276
HF + S R F +Y FST N+D K LNK +G+ + T D++
Sbjct: 276 HFNTTHPAKSDPRGFIMDYEFSTRFVNID---KLLNKQRGVTHIRGTECDVR 324
>AL132876-27|CAD21658.1| 906|Caenorhabditis elegans Hypothetical
protein Y105E8A.7a protein.
Length = 906
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 121 HFGREYRNNSLGRRFHGNY*FSTDLENVDPWSKYLNKSQGIDSKKSTTDDLK 276
HF + S R F +Y FST N+D K LNK +G+ + T D++
Sbjct: 276 HFNTTHPAKSDPRGFIMDYEFSTRFVNID---KLLNKQRGVTHIRGTECDVR 324
>AF045644-3|AAC02602.2| 205|Caenorhabditis elegans Hypothetical
protein F57H12.6 protein.
Length = 205
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 208 PWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEK-NKSISER 330
PWS+ K + + K+ D+LK+F++ K EK +K E+
Sbjct: 108 PWSEKPEKIEALAEKELDGDNLKKFKEFKEKKEKEDKEYKEK 149
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 442 AGPFLQAECDSIGGCPTGDAKVTGGYNLP 528
AGP +Q + GG P KVT G N+P
Sbjct: 1126 AGPMIQQGKNIAGGYPPNQNKVTPGKNVP 1154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,081
Number of Sequences: 27780
Number of extensions: 344619
Number of successful extensions: 1100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -