Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I16
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   2.3  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   5.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   5.4  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   7.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.5  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   9.5  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 309 LKQVLGDAFVKNMDIVNEFFFTGFCSFRS 223
           +KQ L D+F  N +  N FF + + SF S
Sbjct: 468 IKQALNDSFDGNEEKKNAFFLSSYKSFAS 496


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 258 EFFFTGFCSFRSGVY 214
           +FF T FC FRSG +
Sbjct: 231 QFFHTAFCLFRSGSF 245


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 359 KPHP*FYWACSFSKFIYVQNVRITNVVTV 445
           +PHP F +    S++IY+  + +  + T+
Sbjct: 550 EPHPSFEYVSRLSQYIYLLRIALVRLYTI 578


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 398 Y*NYTPNKITDVASMILKL 342
           Y NYTPN + D+ + IL L
Sbjct: 334 YKNYTPNALVDLIARILAL 352


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 288 AFVKNMDIVNEFFFTGFCSFRSGVYTII 205
           A +KN D VN  ++       SGV TI+
Sbjct: 51  AVIKNFDEVNRMYYIQVVGNLSGVITIV 78


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 125 WXRSSLLGXRVPKSLMPKTCG 187
           W R    G  +PK ++P  CG
Sbjct: 22  WTRIGFSGEDIPKCVLPSYCG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,324
Number of Sequences: 5004
Number of extensions: 28462
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)