Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I15
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 254 1e-68
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 71 2e-13
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 64 2e-11
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 53 4e-08
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 46 4e-06
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 42 9e-05
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 28 1.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 2.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.5
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 27 3.5
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 26 4.6
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 26 6.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.1
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.1
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 254 bits (621), Expect = 1e-68
Identities = 112/195 (57%), Positives = 153/195 (78%)
Frame = +1
Query: 124 HGGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 303
+GG+ VAM G+ CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD QT+++
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 304 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 483
++++NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P++C D
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPFICGFDS 125
Query: 484 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAV 663
IGC + EDF+VSGT +EQLYGMCE+++EPNL+PD+LFETISQAL+NA DRD ISGWG V
Sbjct: 126 IGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCV 185
Query: 664 VYIIEKDKITXKHVK 708
VY+I DK + VK
Sbjct: 186 VYVITADKCIKRLVK 200
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +1
Query: 124 HGGAVVAMXGQACVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQ 300
+GG VA+ G +A D R + ++T F P+V ++G L +G G D + +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 301 RLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMD 480
R++ R++LY R M ++ + M+ LLY +RF PY++ +AG+D + + + + D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDK-EGKGEIYSFD 129
Query: 481 LIG 489
+G
Sbjct: 130 PVG 132
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 64.1 bits (149), Expect = 2e-11
Identities = 47/191 (24%), Positives = 88/191 (46%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 306
G + A+ + V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 307 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLI 486
K+ +++Y ++ T + + S + Y+ + ++AG D V ++ L
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLG 141
Query: 487 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVV 666
G ++ + + G+ S +YG C+A + N+ +E E + A+ A +RD SG +
Sbjct: 142 GSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRM 200
Query: 667 YIIEKDKITXK 699
I+ KD + K
Sbjct: 201 VILNKDGMERK 211
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 53.2 bits (122), Expect = 4e-08
Identities = 46/187 (24%), Positives = 78/187 (41%)
Frame = +1
Query: 124 HGGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 303
HG +A Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 304 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 483
L L++L+ ++ S +LSN+ Y + + ++AG Y + D
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD- 178
Query: 484 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAV 663
G + + F V G+ S YG+ ++ + +L E +++V A RDA SG
Sbjct: 179 -GTRLKGDLFSV-GSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVN 236
Query: 664 VYIIEKD 684
+Y I+++
Sbjct: 237 LYHIDEN 243
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 46.4 bits (105), Expect = 4e-06
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 306
G +V+A+ V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 307 KFRMNLYE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYVCN 474
++ + E + ++P LS +LY RR PY+ + ++AG+D + +PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 475 MDLIG 489
DL G
Sbjct: 162 ADLRG 166
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 41.9 bits (94), Expect = 9e-05
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 306
G +A+ G C+ I +++ + Q VS NF K+ + + + GL D + + +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 307 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCN 474
+ ++L + + + ++ + Y + G P+ + +IAG D DN P V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 475 MDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALV 621
+ G N + + G S+ E W+ L DE +L+
Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRDETIHLAVSSLL 196
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 163 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 279
VA A D G+ S + +VF++G L VG+ G T
Sbjct: 419 VAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 98 REKLKHFL-TWNXWKVMNAKD 39
+EK + L W WK++NAKD
Sbjct: 566 KEKSRELLEAWQEWKILNAKD 586
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 656 PQPEMASRSAAFTRACEIVSKSSSGFKLGSQRASHIPYSCSEQVPDTTK 510
P P+ ++ A R +S SSS FK +Q SH+P +E VP +K
Sbjct: 267 PTPDNSAVIEAARRTYSSISSSSSPFKKKTQ--SHLPNRTTE-VPSISK 312
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 204 LSLYTKPLVRSDGHTGLALHG 142
LS Y K L+R D H G+A+ G
Sbjct: 56 LSSYQKKLIRIDDHIGIAIAG 76
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 204 NSINQLPKSIPNGTHIVCRPSRS 272
+S+ LP +P+G I C P RS
Sbjct: 84 HSLKDLPSEMPDGMVIACIPKRS 106
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 586 DELFETISQALVNAADRDAISG 651
DEL +T+S +AAD DA+ G
Sbjct: 298 DELLDTLSTTSPDAADDDALQG 319
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 665 TTAPQPEMASRSAAFTRACEIVSKSSSGFKLGSQRASHIPYSCSEQVPDTTKSSGSFGQP 486
TT+P +S S++ + + S SSS S +S S S ++ SS S P
Sbjct: 152 TTSPSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVP 209
Query: 485 IKS 477
I S
Sbjct: 210 ITS 212
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 30 GHSIFCVHHFPVIPSQKVL 86
GH I+ VH F VIP + +L
Sbjct: 75 GHKIYRVHKFEVIPYRNLL 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,413
Number of Sequences: 5004
Number of extensions: 64107
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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