Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I15
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 223 7e-59
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 54 1e-07
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 46 2e-05
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 46 2e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z70211-1|CAA94157.2| 299|Caenorhabditis elegans Hypothetical pr... 28 7.6
AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical... 28 7.6
AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin bet... 28 7.6
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 223 bits (546), Expect = 7e-59
Identities = 101/194 (52%), Positives = 134/194 (69%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 306
GG VVAM G CV IA+D R G Q T++T+ KV ++ +YVGL G +D +TV +++
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 307 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLI 486
FR NLYEL+ENR ++P+ S M+SNL Y+ RFG YF EP++AGLD N+PY+C MD I
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPYICCMDTI 126
Query: 487 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVV 666
GC + P DFV GT E L G+CE W N+KPDELFE +Q++++ +RDA SGWGAVV
Sbjct: 127 GCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAVV 186
Query: 667 YIIEKDKITXKHVK 708
Y I KDK+ +K
Sbjct: 187 YTITKDKVNVSTIK 200
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 54.0 bits (124), Expect = 1e-07
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 1/186 (0%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 306
G ++AM V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 307 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD-PYDNQPYVCNMDL 483
K+ +++Y + EN+ + S + LY R ++AG D Q Y
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIP--- 138
Query: 484 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAV 663
IG + SG+ S + G ++ W PNL +E + QA+ A RD SG
Sbjct: 139 IGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSGGVVR 198
Query: 664 VYIIEK 681
+ +I K
Sbjct: 199 LAVINK 204
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 303
GG+ A+ G+ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 304 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 483
L+ R++ Y M + +LS LY RRF PY+ ++AG+D + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 484 IGC 492
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +1
Query: 127 GGAVVAMXGQACVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 303
GG+ A+ G+ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 304 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 483
L+ R++ Y M + +LS LY RRF PY+ ++AG+D + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 484 IGC 492
IGC
Sbjct: 170 IGC 172
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 46.0 bits (104), Expect = 3e-05
Identities = 40/163 (24%), Positives = 71/163 (43%)
Frame = +1
Query: 163 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 342
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 343 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLIGCPNEPEDFVVS 522
+ S +N LY R + ++AG D P + +D G + + V
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD--KKGPQIFKVDSEGDRCQLKVCSV- 199
Query: 523 GTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISG 651
G+ S YG+ + ++P + DE + +A+++A RD+ SG
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSG 242
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +1
Query: 511 FVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAISGWGAVV 666
FV SGT S + G C+ L E LK +E+ E+ ++A ++AA R SG G+ V
Sbjct: 91 FVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQR--ASGEGSEV 140
>Z70211-1|CAA94157.2| 299|Caenorhabditis elegans Hypothetical
protein K11E4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 580 SSWAPRELHTYHTAVQNRCPI 518
+SW+ L+TY+T N CP+
Sbjct: 248 TSWSSVALNTYNTCASNMCPV 268
>AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical
protein Y17G7B.15a protein.
Length = 826
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 573 GLPESFTHTIQLFRTGARYHKIFRFIWATNQVHV 472
GL E++ HT+ LFRT + + F +N + +
Sbjct: 95 GLSEAYAHTVNLFRTYFDHSNVVTFTKLSNFIKI 128
>AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin beta
1A protein.
Length = 826
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 573 GLPESFTHTIQLFRTGARYHKIFRFIWATNQVHV 472
GL E++ HT+ LFRT + + F +N + +
Sbjct: 95 GLSEAYAHTVNLFRTYFDHSNVVTFTKLSNFIKI 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,886
Number of Sequences: 27780
Number of extensions: 369079
Number of successful extensions: 941
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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