Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I12
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0124 - 978511-978515,979256-979345,979423-979498,979617-97...    34   0.10 
11_03_0175 + 11241151-11241157,11241253-11241425,11241619-112417...    29   3.9  
03_05_0863 + 28357585-28357635,28357782-28357851,28357987-283580...    28   6.8  
09_04_0187 - 15403048-15403237,15403808-15403959,15404052-154042...    28   9.0  

>08_01_0124 -
           978511-978515,979256-979345,979423-979498,979617-979697,
           979794-979960,980051-980489
          Length = 285

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +1

Query: 493 PNGKPQVYSSTSSTKVGPNGIKETRKTLQDSRTGTKKMAIGHHIGERGHVIEREQNVYTG 672
           PNG    Y+S+++ + G +G+    +   D+ TG     I   IG +GH + R+ +   G
Sbjct: 185 PNGA--CYTSSATRRTGGDGVTFEERKEADTTTGKATHRISRGIGNKGHSLTRKLS-SDG 241

Query: 673 DAEERQEFINLXXXXXXXFDREF 741
           + +  Q   NL       F+  +
Sbjct: 242 NVDTMQTLHNLNEDELARFEESW 264


>11_03_0175 +
           11241151-11241157,11241253-11241425,11241619-11241702,
           11242895-11242936,11243407-11243517,11245384-11245575,
           11245776-11245859,11246162-11246259,11246670-11246859
          Length = 326

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
 Frame = -1

Query: 671 PVYTFCSRSITWPRSPMWWPMAIFFV---PVL-------ESWSVLRVSLIPLGPTFVLLV 522
           P Y F  R I +    +++  AI+F+   P+        E WS+ RV++  LG   ++ +
Sbjct: 233 PYYEFIDRDIMYKVGSLFY--AIYFIVSFPMFSRIDENEEKWSLSRVAVDALGAAMLVTI 290

Query: 521 ELYTWGLPFGPL 486
            L  W +  GP+
Sbjct: 291 ILDLWRIFLGPI 302


>03_05_0863 +
           28357585-28357635,28357782-28357851,28357987-28358054,
           28358757-28358818,28359491-28359572,28359658-28359891,
           28360210-28360338,28360430-28360491,28360779-28360896
          Length = 291

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 623 MWWPMAIFFVPVLESWSVLRVSLIPLGPTFVLLVELYTWGLP 498
           +WW + +   PVL     L +    LGP F+ L+ L+  G+P
Sbjct: 192 LWWGIFVASTPVLSGAEWLVI----LGPVFLTLLLLFVSGIP 229


>09_04_0187 -
           15403048-15403237,15403808-15403959,15404052-15404210,
           15404422-15404562
          Length = 213

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
 Frame = -1

Query: 629 SPMWWPMAIFFVPVLESWSVLRVSLIPLGPTFVLLVELYTWGLPFGPLD--ITTVLLLKE 456
           S  W   A+  V     WS+  +S +P+  ++   + L  W   F  L      V L  +
Sbjct: 23  SSKWVLGALCLVASSSCWSLWLISQVPMCKSYADPLSLSAWTCFFSALQSAALAVFLAPD 82

Query: 455 LPALIFPPSISLKSRFIEGICGINGINAVL---C---RGPIIAMWFSP 330
           L A        L      G  G +G+N  L   C   RGP+    F+P
Sbjct: 83  LDAWKIHSLFELSGYIFAGAFG-SGVNFYLQSWCTSVRGPLYPAMFTP 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,667,638
Number of Sequences: 37544
Number of extensions: 431724
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)