Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I10
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.83 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.83 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 461 EGSHWNR*GRPSSQPQINRDTPKGRTPP 378
           +G++ ++ G P  QP I +   +G+ PP
Sbjct: 194 QGANMHQQGPPHQQPPIQQQPNQGQQPP 221


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 461 EGSHWNR*GRPSSQPQINRDTPKGRTPP 378
           +G++ ++ G P  QP I +   +G+ PP
Sbjct: 196 QGANMHQQGPPHQQPPIQQQPNQGQQPP 223


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 215 PVIISTLLTLCSSYSMLLCLFSVAI 141
           PV++S L+ +C  Y    C F+ +I
Sbjct: 171 PVLLSGLIAMCGMYYRDECSFAESI 195


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 215 PVIISTLLTLCSSYSMLLCLFSVAI 141
           PV++S L+ +C  Y    C F+ +I
Sbjct: 404 PVLLSGLIAMCGMYYRDECSFAESI 428


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 215 PVIISTLLTLCSSYSMLLCLFSVAI 141
           PV++S L+ +C  Y    C F+ +I
Sbjct: 404 PVLLSGLIAMCGMYYRDECSFAESI 428


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -2

Query: 522 SFSIIKVLSHSCGFPCKIGSGGVTLEQVRTSFFPATDQ*RYP 397
           +F   K +S+   +   +  GGV +  + T  F      +YP
Sbjct: 332 AFDSPKAISNKVEYAKSLNLGGVMIWSIETDDFRGVSGTKYP 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,460
Number of Sequences: 336
Number of extensions: 4151
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)