Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I07
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    58   1e-09
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    36   0.005
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   5.6  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   7.4  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    26   7.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   7.4  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +2

Query: 320 DVNEVYPGLFVGDAVAAKDKAFLRRMGINYVLNTAEGKRYTQVDTDHLYYRDCPGLRYKG 499
           D++E+   L++     A +       GI+Y L+         V          P  ++  
Sbjct: 46  DLSEISKNLYISSWKTASELVSTSDKGIDYTLSAMSINPNLSV----------PEQQHLW 95

Query: 500 FQLMDLPTTDISKYFHIAANFIDEGVSSGGRVLVHCMMGVSRSATCALAFLMIKRGMSLT 679
            Q+ D  + +I +YF  +  FI   +S   +VLVHC  G+SRS T   A+LM +   +  
Sbjct: 96  LQIEDSSSQNILQYFEKSNKFIAFALSKNAKVLVHCFAGISRSVTLVAAYLMKENNWNTE 155

Query: 680 EALCTVRARRD-IHPNDGF 733
           EAL  +  RR  I PN  F
Sbjct: 156 EALSHINERRSGISPNANF 174


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +2

Query: 590 RVLVHCMMGVSRSATCALAFLMIKRGMSLTEALCTVRARRD-IHPN 724
           +VL++C MG+SRSA   +AF+M    +++++A   V+ R   I PN
Sbjct: 153 KVLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYVKERSPWIGPN 198


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 348 NNPGYTSLTSGVGLYETS--VKGRERRDDREPKTEEGE 241
           N PGY+S+TSG G   +   V   +  DD E    + E
Sbjct: 517 NAPGYSSVTSGYGTTNSKKVVASYDNTDDNEYSVSKSE 554


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 650 LMIKRGMSLTEALCTVRARRDIHPN 724
           L ++RG  L E  CT ++  DI P+
Sbjct: 352 LTVQRGSELVELTCTAQSTHDIAPD 376


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -1

Query: 354 PTNNPGYTSLT---SGVGLYE-TSVKGRERRDDREPKTE 250
           P+NNP YT+LT   S +G  +  S+  R+ R +R+P TE
Sbjct: 614 PSNNPVYTNLTDTDSMMGAPDYFSIPARQNR-NRKPHTE 651


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 291 KGRERRDDREPKTEEGEEPK 232
           +G+E ++  EP  EE EEP+
Sbjct: 112 EGKEAKEPEEPPKEEAEEPQ 131


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 351 TNNPGYTSLTSGVGLYETSVKGRERRDDREPKTEEGEEPKL 229
           +N+P +    S    Y+ S KG+ R +   P  ++G +P++
Sbjct: 156 SNSPSFPPSQSHTSSYDQSPKGQLRDNISVPNQQDGLDPEV 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,716
Number of Sequences: 5004
Number of extensions: 54710
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)