Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I03
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.31 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.2  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   1.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.8  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   5.0  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 CGGDYADFQYLKDIIQQKIIDE 467
           C GD  D   ++DI+ Q ++DE
Sbjct: 108 CPGDLYDSDIIQDIVPQNVLDE 129


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 558 DPSCSSCCRGHESTSSAENGA*AGDHLQHSAHQ 460
           DPS SSC +G  S++     A +     H  HQ
Sbjct: 132 DPSVSSCHQGFSSSTWCNYSAYSSASRHHVDHQ 164


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 210 PSRHGVQDFTAHSASPITTTTTVIGVKFDKGC 305
           PS+HG+ D TA    P   T  +  + +++ C
Sbjct: 267 PSKHGLNDATAAPGEPGPYTVNLGSLGYNEIC 298


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 287 NSDDSCGGRDGAR 249
           N+DDS GGR G R
Sbjct: 87  NNDDSGGGRGGGR 99


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 312  AGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKD 440
            AG+   + G LA +  C  V+K    ++    G    + YL+D
Sbjct: 2092 AGEETRARGFLAYYEICTNVIKKGWKVVRDRRGRIGPYAYLRD 2134


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +3

Query: 564 WNSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVD 710
           W+   +   Q+G      +D L T Y   +I N L  Y A  L     D
Sbjct: 113 WDKVEIVRSQEGRFEEAVIDYLFTVYLLPIIINPLVLYEARKLANVVTD 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,248
Number of Sequences: 336
Number of extensions: 4285
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)