Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I02
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   9.1  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 245 GGVVDRPASTVRLQQRVLTLHVVSQTALHLVLEV 144
           G  VD   S    Q  ++T H+ SQ  LH V  V
Sbjct: 361 GETVDLFNSLFGYQTLLITFHIGSQLVLHTVKTV 394


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 46  VREVRRCPXPLWPSP 90
           +R VR+C   LW  P
Sbjct: 138 IRAVRKCLYKLWKMP 152


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 46  VREVRRCPXPLWPSP 90
           +R VR+C   LW  P
Sbjct: 138 IRAVRKCLYKLWKMP 152


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 73  PLWPSPGPAITP 108
           PL PSPGP   P
Sbjct: 116 PLTPSPGPPSHP 127


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 67  PXPLWPSPGPAITPTSHTASRILTL 141
           P P    PGPA+ P     +  L L
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLPL 177


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 67  PXPLWPSPGPAITPT 111
           P P    PGPA+ PT
Sbjct: 153 PNPSIIDPGPALPPT 167


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 64  NDELHEHFSSYCRDYVNVTCG 2
           N +L E FSSY R    ++ G
Sbjct: 416 NPDLAEAFSSYARKNARLSFG 436


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 64  NDELHEHFSSYCRDYVNVTCG 2
           N +L E FSSY R    ++ G
Sbjct: 241 NPDLAEAFSSYARKNARLSFG 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,776
Number of Sequences: 336
Number of extensions: 1515
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)