Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I02
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   1.3  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   3.1  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   3.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.1  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   7.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.2  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   7.2  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   7.2  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   9.5  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 52  HEHFSSYCRDYVNVTC 5
           H H  S+CRD++ + C
Sbjct: 373 HSHLQSFCRDWLRIVC 388


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 162 ESRLGDNVKGQYSLLESDGTRRTVDYAAGAE 254
           +S +GD++ G YS+LE+ G     D     E
Sbjct: 399 DSMVGDSIHGLYSILETSGAEIVGDIKRAQE 429


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 423 FSKRFLCSCKGSSRC 379
           +S+ FLCSC+G S C
Sbjct: 6   WSRNFLCSCRGFSVC 20


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 78   VAVARAGDYSNFAYSVADPYTGDFKN 155
            V +  A D  N++ ++ +PYT DF++
Sbjct: 2844 VTILDASDPGNYSNNIENPYTKDFED 2869


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 210 SDGTRRTVDYAAGAEGFNAVVRKDPAL 290
           +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54  ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 43  NVREVRRCPXPLWPSPGPAITPTSHTASR 129
           +V  V   P P  PS GPA   T+ T SR
Sbjct: 176 HVLSVAASPNPSTPSNGPAPVSTTATPSR 204


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
          L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 89 GDGHKGQGQRRTSR 48
          G GHKG GQRR  R
Sbjct: 30 GRGHKGSGQRRGRR 43


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 210 SDGTRRTVDYAAGAEGFNAVVRKDPAL 290
           +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54  ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 55  VRRCPXPLWPSPGPAITPTSHTASRILTLA 144
           VR  P    P P     P+ H   RIL LA
Sbjct: 206 VRETPLSSAPEPKRRFAPSKHEQKRILQLA 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,596
Number of Sequences: 5004
Number of extensions: 23521
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)