Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I02
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1048 - 23545060-23546381,23546479-23546554                       28   4.1  
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390...    28   4.1  
07_03_0417 - 17970032-17970132,17970290-17970635                       28   5.4  
10_07_0181 - 13884007-13884767,13885263-13885329                       27   9.5  
08_01_0997 + 10132340-10132556,10132890-10132945,10133307-101335...    27   9.5  

>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 459 FVCLFISLGAFCFSKRFL 406
           FVCL   LG  CFS RFL
Sbjct: 137 FVCLGCILGGLCFSPRFL 154


>03_04_0167 +
           17936598-17936763,17938735-17938831,17938919-17939027,
           17939125-17939163,17939655-17939768,17939886-17939947,
           17940691-17940793,17942111-17942260,17942693-17942761,
           17942840-17942896,17942966-17943226,17946154-17946222,
           17946374-17946475,17947200-17947270,17947375-17947578,
           17947848-17947941,17948350-17948646
          Length = 687

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 233 DRPASTVRLQQRVLTLHVVSQTALHLVLEVASVRIRDAVCEVGV 102
           D+  S   LQ  ++ L   +Q++L ++ +   VR RD+ C V +
Sbjct: 206 DQKRSNDALQMELMRLKEQTQSSLKVIQKFYDVRCRDSECSVNI 249


>07_03_0417 - 17970032-17970132,17970290-17970635
          Length = 148

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 101 IAGPGDGHKGQGQRRTS 51
           +AG GDGH+  GQR++S
Sbjct: 54  VAGSGDGHRRAGQRQSS 70


>10_07_0181 - 13884007-13884767,13885263-13885329
          Length = 275

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 49 REVRRCPXPLWPSPGP 96
          R V +CP P+WP+  P
Sbjct: 34 RVVNKCPFPVWPAAAP 49


>08_01_0997 +
           10132340-10132556,10132890-10132945,10133307-10133507,
           10133899-10134027,10134777-10134941
          Length = 255

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 85  SPGPAITPTSHTASRILTLATSRTRWRAVWE 177
           +PGP +  T +     +  AT R+RWR  W+
Sbjct: 46  APGPILVCTRNDDLDAVLDATPRSRWRVQWK 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,785
Number of Sequences: 37544
Number of extensions: 192299
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)