Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_I02
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)             27   7.3  
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   27   9.7  

>SB_36326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 94  PAITPTSHTASRILTLATSRTRWRA-VWETT*RVSTRCWSLTVLA 225
           P +T T  TAS    LA S  R+RA V     +V+T+   LTVLA
Sbjct: 130 PPLTYTFTTASSAFLLAVSLERYRAVVHPLRGKVTTKQLKLTVLA 174


>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 218 TVRLQQRVLTLHVVSQTALHLVLE-VASVRIRDAVCEVGVIAGPGDGHKGQGQRRTS 51
           T+ L +RV   H   Q A H+V + V+++R  D     GV      GH+  G+RR S
Sbjct: 414 TIALVERVRLHH--QQRAPHIVRKPVSTLRSFDGFSRRGVTRSTPCGHRRDGRRRGS 468


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 180  NVKGQYSLLESDGTRRTVDYAAG 248
            + KG Y   + DG RRT++Y +G
Sbjct: 1740 HAKGSYDTHDVDGRRRTIEYYSG 1762


>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
          Length = 807

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 73  PLWPSPGPAITPTSHTASRILTLATSRTRWRAVWETT*RV 192
           PL     P ITP  +  SR  +   S++R+   W++T +V
Sbjct: 140 PLLEIHSPGITPLGNPQSRYYSSGNSQSRYYPSWKSTAQV 179


>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2085

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 154  FLKSPV*GSATLYAKLE*SPALATATKXKDNDELHEHFS 38
            F K P   +A  YAK+  + A+A A K ++  E H H+S
Sbjct: 1445 FTKDPS-ANAMDYAKMTAAVAVAVALKAREVCEAHTHYS 1482


>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 96  GDYSNFAYSVADPYTGDFKNQVESRLGDNVKGQYSLLESDGTRRTVDY-AAGAEGFNAVV 272
           GDY+     V D + GD+    +S  GD V+   S     G    V Y AAG  G  A+ 
Sbjct: 182 GDYAR----VCDSFQGDYARVSDSFQGDYVRVSDSFQSFQGDYARVRYAAAGFFGRQAID 237

Query: 273 RKDPAL 290
              P L
Sbjct: 238 DSRPTL 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,916
Number of Sequences: 59808
Number of extensions: 201934
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)