Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H24
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    29   0.56 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.9  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   6.9  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   9.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   9.1  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 471 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 581
           EEKR+++EE++K  + +LQA  +  K   N  + KKS
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKS 172


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 583 SLFFWMVKLGPVLLASFMAWSIAW 512
           SL+FW   L P    +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 555 PNFTIQKKSENFGLSNAXLERN 620
           P FTI++K +NF ++N   ERN
Sbjct: 490 PGFTIEQKDKNFSINN---ERN 508


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 234 EFIKRQDQKRSDLDEQLKEY 293
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 289 NTSTNGASSGPRRRMSSNALKRSRPSARFLV 381
           N     A   P    SSN+ K S PS  FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +1

Query: 298  TNGASSGPRRRMSSNA---LKRSRPSA 369
            +NG SS PR R+  NA   L RS P +
Sbjct: 992  SNGLSSPPRERLDDNAKEILSRSSPKS 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,890
Number of Sequences: 5004
Number of extensions: 22612
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)