Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H24
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    36   0.032
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    36   0.032
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    28   4.8  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    28   6.4  
U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    27   8.4  

>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 29/127 (22%), Positives = 49/127 (38%)
 Frame = +3

Query: 222 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 401
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 402 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 581
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 582 ENFGLSN 602
           E+ G+ +
Sbjct: 165 ESAGVGD 171


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 29/127 (22%), Positives = 49/127 (38%)
 Frame = +3

Query: 222 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 401
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 402 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 581
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 582 ENFGLSN 602
           E+ G+ +
Sbjct: 165 ESAGVGD 171


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 465 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENF 590
           D E+ ++ ++E EK +   L      S  GP  T +K+ +NF
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNF 555


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 214 KRVREIQNSSSVKTRSGRTWMNS*RNTSTNGASSGPRRRMSSNALKRSRPSAR 372
           KR R   +SSS  + S  +  +S  + S++ +SSG R R  S   + +RP AR
Sbjct: 9   KRARSSSSSSSSSSGSSSSGSSSSGSRSSSSSSSG-RSRSRSPRRRDTRPPAR 60


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 471 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAXLERNKTKE 632
           +EK+Q+L+E EK+R+ + Q  ++          ++ +E+    ++  ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269


>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 7   ADGRPGSPRXSTFQRRCAAGPSHQCRVPXCP 99
           A G PG P  +T Q  C A     CRV  CP
Sbjct: 142 APGLPGVPGKTTIQAPCEAASPPPCRV--CP 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,755,950
Number of Sequences: 27780
Number of extensions: 144036
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)