Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H22
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.8  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   4.2  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   4.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   7.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   7.4  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   9.8  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   9.8  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +1

Query: 445 LFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF--NAQALEPS 618
           +F+     V  DE+   + L  S  LR   D++    +    +  Y   F   A+A E +
Sbjct: 140 MFNDAFNEVIEDEEKRVVDLYPSS-LRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKN 198

Query: 619 MVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLWPFLXRFE 750
            V    +GL+ L++ L+     +L GD     D  L+  + RF+
Sbjct: 199 -VRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFD 241


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 337 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 516
           IP D++F+ +DQK    F  S          +   AL    I+  +LD+++  IP+   +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295

Query: 517 PLRRAQDKIL 546
            +R  + K+L
Sbjct: 296 CIRPNELKVL 305


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 316 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 417
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  NSCFSQSKILSAKQGVFNALQLRXCSP 117
           N  FS+ ++LS    VFNA  L  C P
Sbjct: 308 NQPFSEIRLLSPASEVFNAKTLSWCLP 334


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 24/97 (24%), Positives = 31/97 (31%)
 Frame = +1

Query: 415 PALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF 594
           PA   E  K   +S   N   DEK  E PL   +     +             A      
Sbjct: 497 PATNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQ 556

Query: 595 NAQALEPSMVETYHKGLEGLQKELETRSTKYLHGDEP 705
            ++ LEP    T +  L  L KE +   T      EP
Sbjct: 557 VSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 328 AKNIPYDLVFINLDQKP 378
           AK + YD +++NL +KP
Sbjct: 3   AKTVQYDNIYLNLSEKP 19


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 613 PSMVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLW 729
           P  V+   +  +  +K++ETR    +  ++PG V Y LW
Sbjct: 37  PRKVKIVKRKKQPARKQIETRPEYEMEPEQPGQV-YNLW 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,354
Number of Sequences: 5004
Number of extensions: 63227
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)