Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H21
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.64 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   0.85 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   6.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 29  NLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVT---ACTLEFFRKVK 199
           NLS   +Y G+ ++     T   EY+L  ++    RKC+ +   +T      LE++  + 
Sbjct: 16  NLSYKVMYNGNNNV-----TDLVEYVLLNEDNPCARKCVKDSVPMTCRYTFLLEWYHTLS 70

Query: 200 KTC 208
           K C
Sbjct: 71  KAC 73


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 356 EARVHDTKRPKPLPEPKAVYPDATPALPEDAE 451
           E  +HD +   PLP P+ V   A P L  D +
Sbjct: 101 EKGMHDQQNNNPLPSPRRV---AVPVLVRDGK 129


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 383 PKPLPEPKAVYPDATPALPEDAEKKP 460
           P+P+P P+      T + P  A ++P
Sbjct: 393 PEPVPTPEPQPTQTTESEPTQASEQP 418


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 217 LSQAGLLHFPEELQCTGSD 161
           L +A ++H  EE++  GSD
Sbjct: 521 LDKADMVHLVEEIERLGSD 539


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 329 VSLVSQACTDQRHLESSGN 273
           V +V+ + T+ RHL   GN
Sbjct: 505 VPIVTHSLTELRHLSLEGN 523


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,795
Number of Sequences: 336
Number of extensions: 2662
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)