Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H21
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0669 + 10295160-10295356,10296003-10296045 40 0.001
12_01_0877 - 8415186-8415272,8415696-8416310 29 3.7
06_02_0117 - 12027116-12027401,12029770-12030149 29 3.7
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 29 3.7
05_01_0206 + 1487034-1489430 29 3.7
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 29 3.7
06_03_1248 + 28685911-28687719 28 4.9
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 28 4.9
07_03_1432 - 26508135-26508881,26509301-26509708 28 6.5
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 6.5
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 28 6.5
09_02_0543 + 10427321-10428315,10428440-10429154 27 8.6
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 27 8.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 27 8.6
06_03_0429 - 20701107-20701534,20701628-20701847 27 8.6
05_03_0040 - 7646525-7647775 27 8.6
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 27 8.6
>03_02_0669 + 10295160-10295356,10296003-10296045
Length = 79
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 2 ASALPVQAVN---LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTAC 172
AS+ PV A + S L A S H+ C N ++ C++++ +P+KC+ +G+ V C
Sbjct: 3 ASSAPVDASGDPIPTSSVLMAASKHIAVRCRPENVAFLNCKKKDPNPQKCLEKGRQVKRC 62
Query: 173 TLE 181
+
Sbjct: 63 VFD 65
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 326 LPRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKP 460
LPR EA + + PKP P+ P+ P LP E P
Sbjct: 142 LPRTEITDDIEATLPKKEEPKPPSPPREAEPEPEPPLPPPEEPTP 186
>06_02_0117 - 12027116-12027401,12029770-12030149
Length = 221
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 375 PRDRSLYRSQRLSTRTPRQLYQKTPR-RNHQGSAPVSTG*RNSAKDGEYATDKL 533
P + ++R +L +TP QL Q+ R + H G+ V G R ++GE D L
Sbjct: 6 PHRQGVHRELQL-LQTPEQLEQRRLRLQQHGGTNSVGGGGRGGVEEGEREEDDL 58
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 407 AVYPDA--TPALPEDAEKKPPRLGSRFYWM 490
A YP A +PAL DA KPP +G R +++
Sbjct: 363 AAYPAAAASPALAFDASSKPPLIGGRPFFL 392
>05_01_0206 + 1487034-1489430
Length = 798
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = +2
Query: 329 PRPGFGYFCEA-------RVHDTKRPKPLPEPKAVYPDATPA 433
P P G FC+ R DT P P P P+ P ATP+
Sbjct: 310 PLPDSGRFCKVSGDVICRRFCDTSPPPPPPSPRTPSPPATPS 351
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 365 VHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPRL 469
V P PLP P V P P P + PP+L
Sbjct: 312 VKSVTAPSPLPVPVHVVPVPVPVQPVQVQLPPPQL 346
>06_03_1248 + 28685911-28687719
Length = 602
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/81 (25%), Positives = 31/81 (38%)
Frame = +3
Query: 333 APALDISARLESTIPRDRSLYRSQRLSTRTPRQLYQKTPRRNHQGSAPVSTG*RNSAKDG 512
APA+ S + + + R S +PRQL QK +GS+ S + +
Sbjct: 110 APAVATSRPITPKDKAKAAAASTSRWSAVSPRQLMQKASNAFTRGSSSKSRAAKKDKEAA 169
Query: 513 EYATDKLXRDDAVLPIITSTI 575
A DA P TS +
Sbjct: 170 TPAATSAAAKDAATPASTSAV 190
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 380 RPKPLPEPKAVYPDATPALPEDAEK---KPPRLGSR 478
+PKP P+PK P P P+ K KPP+ G +
Sbjct: 171 KPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPK 206
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 380 RPKPLPEPKAVYPDATPALPEDAEK-KPPRLGSR 478
+PKP P P P P P+ K KPP+ G +
Sbjct: 162 KPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPK 195
>07_03_1432 - 26508135-26508881,26509301-26509708
Length = 384
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 395 PEPKAVY--PDATPALPEDAEKKPPRLGSRFYWMTE*C 502
P P Y P TP P A PP LG R + + C
Sbjct: 63 PSPPTTYLPPSPTPPSPAPASPSPPSLGLRVGYYSSSC 100
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 74 KYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 250
K C+T+ ++Y C +PR C A C + ++ K C + S CL ++
Sbjct: 92 KKCKTLIDKYEECSNPPKEPRLCPAHELAFEKCLQKNVGEI-KVCQFWMDMMSKCLRRN 149
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 380 RPKPLPEPKAVYPDAT 427
+P+P PEPKA Y +AT
Sbjct: 395 KPEPEPEPKAAYDEAT 410
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 383 PKPLPEPKAVYPDATPALPEDAEKKPP 463
P+P P P+A P PA+PE PP
Sbjct: 16 PRPTPAPQATPP---PAIPESGPPPPP 39
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 377 KRPKPLPEPKAVYPDATPALPEDAEKKPP 463
K P+P P+ K ++ D + A P + + PP
Sbjct: 204 KNPRPNPDIKTLFTDHSCAAPTNGARAPP 232
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 365 VHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPR 466
V+ ++ P P P P + P A P P + PPR
Sbjct: 101 VNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPR 134
>06_03_0429 - 20701107-20701534,20701628-20701847
Length = 215
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/68 (27%), Positives = 25/68 (36%)
Frame = +2
Query: 260 YAFRHCRKTQGVFDQCMLEKLNLPRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALP 439
+ + HC T + + L L PGF YF A K+ + L P PA
Sbjct: 88 FGYYHCNATAAAANDGSVLFL-LDAPGFAYFSSADADHCKKGQRLMINVDSAPSPAPAPA 146
Query: 440 EDAEKKPP 463
KPP
Sbjct: 147 ASPIAKPP 154
>05_03_0040 - 7646525-7647775
Length = 416
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 356 EARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKP 460
E + H +P P PEPK +P+ P E KP
Sbjct: 163 EPKPHPEPKPDPKPEPKP-HPEPEPKPEPKPEPKP 196
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 383 PKPLPEPKAVYPDATPALPEDAEKKP 460
PKP PEPK YP+ P E KP
Sbjct: 230 PKPKPEPKP-YPEPKPKPEPKPEPKP 254
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 329 PRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKP 460
P P + R +K+PKP P+P+ P P P+ +++P
Sbjct: 39 PPPHHHHHHRRRHRHSKKPKPQPQPQ---PPPPPLPPQQQQQEP 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,282
Number of Sequences: 37544
Number of extensions: 309909
Number of successful extensions: 1263
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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