Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H21
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-5|AAK29936.2| 183|Caenorhabditis elegans Hypothetical ... 97 1e-20
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 35 0.038
Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical p... 35 0.051
Z81536-5|CAB04366.1| 297|Caenorhabditis elegans Hypothetical pr... 31 0.62
AF039053-5|AAC25875.2| 293|Caenorhabditis elegans Serpentine re... 30 1.4
AF078157-18|AAG24080.1| 338|Caenorhabditis elegans Seven tm rec... 28 4.4
Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical pr... 28 5.8
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 27 7.7
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 27 7.7
U41007-1|AAA82264.1| 326|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC025723-5|AAK29936.2| 183|Caenorhabditis elegans Hypothetical
protein Y54F10AM.5 protein.
Length = 183
Score = 96.7 bits (230), Expect = 1e-20
Identities = 48/141 (34%), Positives = 75/141 (53%)
Frame = +2
Query: 20 QAVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 199
Q + LS L + + ++ K+CE NE+ML R+E DPR + EG A+TAC + F + +K
Sbjct: 19 QEITLSTPWLKSIAPYMAKHCEKEANEFMLRRKEAEDPRAVLKEGAALTACGVNFLQSLK 78
Query: 200 KTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLPRPGFGYFCEARVHDTK 379
++CL + + + C+D+SS C Q D C+ LNL RP GYF + V+D+
Sbjct: 79 RSCLPQTQKLAECVDQSSAKLYMSKCHDDQKELDACVEANLNLTRPKLGYFSKLHVYDSA 138
Query: 380 RPKPLPEPKAVYPDATPALPE 442
P + + +A L E
Sbjct: 139 TAAPEVKLRDYKAEAAKVLNE 159
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 35.1 bits (77), Expect = 0.038
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Frame = +2
Query: 71 GKYC-ETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDK 247
G C TI + Y+L E +N+ + + A T K K +F + L+K
Sbjct: 239 GPVCYRTIRHRYLLGADFEEHDVDSVNDCRCLCAATYLPNNKKNKCMSFQFRNKTCTLNK 298
Query: 248 SS--GDYAFRHCRKTQGVFDQC----MLEKLNLPRPGFG-YFCEARVHDTKRPKPLPEPK 406
+ G Y RKT + C +LE + P F E + DTK+ P +PK
Sbjct: 299 GNHLGQYDLIEQRKTLYQYVGCDPEILLETASSKCPNFKPKSAEKKKPDTKKETPTKKPK 358
Query: 407 AVYPDATPALPEDAEKKPPR 466
A E E K P+
Sbjct: 359 VELVTAKTVEGEKKETKKPK 378
>Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical
protein F40D4.7 protein.
Length = 295
Score = 34.7 bits (76), Expect = 0.051
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 101 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 199
Y++C + N P C+N G A+ +C ++FR +K
Sbjct: 146 YVICNYQLNVPYNCVNVGCAMNSCFRQYFRPLK 178
>Z81536-5|CAB04366.1| 297|Caenorhabditis elegans Hypothetical
protein F40D4.6 protein.
Length = 297
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 101 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 199
Y++C + N P C+N G A+ +C ++F K
Sbjct: 149 YVICNYKLNIPYNCVNIGCAINSCYRQYFLSSK 181
>AF039053-5|AAC25875.2| 293|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 23 protein.
Length = 293
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 101 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 199
Y C E PR C+ G ++ AC+ F+ K K
Sbjct: 146 YYFCNFELTFPRNCLTIGCSINACSSRFWTKSK 178
>AF078157-18|AAG24080.1| 338|Caenorhabditis elegans Seven tm
receptor protein 28 protein.
Length = 338
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -2
Query: 160 RLTLVDTFSRIILFLTTQHVL-IVNGFTIFSQMKGTS 53
R V TFS ++ L TQ+V+ +V GF ++ +++G +
Sbjct: 195 RWNSVSTFSMFVVILLTQYVICLVCGFIMYRRIEGNA 231
>Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 32 LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCL 211
++GS L GSF +G +C+ I Y+L C ++ + E+F+K + T +
Sbjct: 108 IAGSFLTGGSFVVGPFCKNI---YLLMLATFGMGIGCGLMRNSIISIQCEYFKKKRNTVM 164
Query: 212 A 214
A
Sbjct: 165 A 165
>Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 32 LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCL 211
++GS L GSF +G +C+ I Y+L C ++ + E+F+K + T +
Sbjct: 108 IAGSFLTGGSFVVGPFCKNI---YLLMLATFGMGIGCGLMRNSIISIQCEYFKKKRNTVM 164
Query: 212 A 214
A
Sbjct: 165 A 165
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
ZK430.1 protein.
Length = 1650
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 203 TCLAE-FNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLP 331
TC+ ++Q+++ + +S+GD R+CR D L LN P
Sbjct: 1226 TCIQRVYDQFASFVVESTGDVIIRYCRLIARFGDPSELLALNQP 1269
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 383 PKPLPEPKAVYPDATPALPEDAEKKPPR 466
PK PEPK + P PA+P+ P+
Sbjct: 273 PKKEPEPKKMAPKIPPAVPKSLVSPEPK 300
>U41007-1|AAA82264.1| 326|Caenorhabditis elegans Hypothetical
protein C33H5.7 protein.
Length = 326
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 175 CTGSDRLTLVDTFSRIILFLTTQH 104
CT S +L LVD F+ +I F +H
Sbjct: 218 CTNSSQLLLVDAFTGLIKFTLEEH 241
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 360 LESTIPRDRSLYRSQRLSTRTPRQLYQKTPRRNHQGSAPVSTG*RN 497
L++ + +LY+ + +Q Y T R+NH+ S P S G RN
Sbjct: 89 LQNAETSNENLYKRCNRNKNQRKQEYSNTQRQNHKKSEP-SNGKRN 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,575,729
Number of Sequences: 27780
Number of extensions: 253428
Number of successful extensions: 909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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