Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H21
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.2  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   9.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 362 RVHDTKRPKPLPEPKAVYP 418
           +VH TK PKP  + K   P
Sbjct: 244 KVHATKPPKPQTKTKPTSP 262


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 176 LEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ 304
           ++F  +V + C   FN     + +    YA  H +  Q  F+Q
Sbjct: 523 IDFKIEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQ 565


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 516 YATDKLXRDDAVLPIIT 566
           +A D++ RD+ +LP IT
Sbjct: 90  FAVDQINRDEDILPGIT 106


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 11  LPVQAVNLSGSTLYAGSFHLGKYCE 85
           LPV+    S  T+Y    H   YCE
Sbjct: 140 LPVRGAGKSNITMYDLKSHNDIYCE 164


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 375 PRDRSLYRSQRLSTRTPRQLYQKTPRRN 458
           PR  +L +    +T TP+++ Q   RR+
Sbjct: 421 PRRATLAQLHNFTTMTPQEIAQWIDRRS 448


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/59 (18%), Positives = 23/59 (38%)
 Frame = +2

Query: 71  GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDK 247
           G + E +  E      +EN+  K I E  A++   +         C A++      +++
Sbjct: 77  GNFNEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSSKLIKCFAKYKTLKEIMNE 135


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 308 CTDQRHLESSGNA 270
           C+D  H ESS NA
Sbjct: 73  CSDVHHFESSFNA 85


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 251 SGDYAFRHCRKTQGVF 298
           S DY F  CR   G F
Sbjct: 288 SSDYGFTECRCDPGYF 303


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 519 ATDKLXRDDAVLPIIT 566
           A D++ RD+ +LP IT
Sbjct: 1   AVDQINRDEDILPGIT 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,200
Number of Sequences: 438
Number of extensions: 3442
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)