Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H19
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   1.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   2.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.7  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 46  FKQFPCQGFKSFXGSQCHCISS 111
           F  F C+G KSF G   + ISS
Sbjct: 17  FGAFTCEGCKSFFGRTYNNISS 38


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 160 TXPKTRRIAKQCRRHFTMRCSGTVNP 83
           T P+ R +A+ CR +  +  +GT +P
Sbjct: 240 TSPRARPLARTCRDNRLLVLAGTSSP 265


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -1

Query: 229 MYHTTFQRHTTSTKXYYVFVSX*TXPKTRRIAKQCRRHFT 110
           +YH    R    T      V+    PK + I K C R FT
Sbjct: 51  LYHKLQFRGPPRTPLQPKLVAGKLKPKRQFICKYCNRQFT 90


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -2

Query: 513 DVGGLFNASLMRRQYSSSLSAFGSCIQKKHFFEN 412
           ++    N S  + ++ + +    S +QKKH  +N
Sbjct: 63  EINAFANVSPSKTKFFNLIKRKDSPVQKKHILKN 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,767
Number of Sequences: 336
Number of extensions: 2691
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)