Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H15
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0066 - 12026714-12027211,12027783-12028103 32 0.48
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 29 2.6
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 29 2.6
01_06_1740 - 39575614-39576981 29 3.4
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 28 5.9
08_02_1627 - 28348225-28348725,28349061-28349114,28352613-283528... 28 5.9
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940... 28 5.9
03_01_0404 + 3138624-3140096 28 5.9
11_06_0087 - 19919224-19922304 28 7.8
>09_03_0066 - 12026714-12027211,12027783-12028103
Length = 272
Score = 31.9 bits (69), Expect = 0.48
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 233 HAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDN--DDDVQYAITT--IKR 400
HAVT L GG G + + D+ G EV I N DD+VQYAIT +
Sbjct: 42 HAVTKLVVGGGGVDSARNITDVDG--GDICHREVHSITEEDGNVDDDEVQYAITNEGVGA 99
Query: 401 NGVGLKGNIETKSEAAYVTS 460
+ G G + + SE Y S
Sbjct: 100 DDDGSDGKLSSASEVLYAAS 119
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 251 PGGGIGPE-CMGYVRDIFKYIGAPID 325
P G+G E CM V D F+Y+ AP++
Sbjct: 302 PQHGVGAEICMSVVEDSFEYLDAPVE 327
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 423 LPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAP-MYLNMSRTYPMHSGPIPPP 253
L SP P L V+ SSS + + S+ S S AP + S SGP PPP
Sbjct: 14 LTLSPIPTALRVLSTASASSSSASAAASSSDSDSAAAPDADFDSSEFALPPSGPTPPP 71
>01_06_1740 - 39575614-39576981
Length = 455
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 110 RGSVHLSSKAAPATLSDFDVQHKPPVIRKQKLIPKAQYGGRHAVTMLPG-GGIG 268
R S AAP T H PP R+Q+ I +G RHAV PG GG G
Sbjct: 12 RSRARASGTAAPTTRGPAPQTHAPPQERRQEEI---VHGVRHAVA--PGDGGAG 60
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 251 PGGGIGPE-CMGYVRDIFKYIGAPID 325
P GIG E CM V + F+Y+ AP++
Sbjct: 307 PQHGIGAEICMSVVEESFEYLDAPVE 332
>08_02_1627 -
28348225-28348725,28349061-28349114,28352613-28352810,
28352856-28353380
Length = 425
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 387 VIAYWTSSSLSIVGSMSTTSKSIGAPMY 304
+ YWT+SS +G+ + S+G P Y
Sbjct: 254 LFTYWTTSSRIAIGASISPVSSVGGPQY 281
>04_04_1570 -
34492944-34493159,34493668-34493842,34493964-34494068,
34494454-34494623,34494760-34494830,34494950-34496799,
34497003-34497052,34497147-34497263
Length = 917
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 210 GISFCFLITGGLCWTSKSDNVAGAAFELRC 121
G S C + GG T S++VA A E+RC
Sbjct: 171 GASHCIDVAGGESLTLSSNHVAHAGSEMRC 200
>03_01_0404 + 3138624-3140096
Length = 490
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 280 HALRTDTASREHGHRVTTAVLRLRNQLLFPDNGRLVLD 167
HAL H VTTA+L+L+ PD+ R V D
Sbjct: 119 HALLVKNGHFPSDHYVTTALLQLQLHAARPDDARRVFD 156
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 357 SIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPP 253
++VG++S S+ +L++SR Y S P PPP
Sbjct: 104 ALVGAISPALLSLRRLRHLDLSRNYLQGSPPGPPP 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,080
Number of Sequences: 37544
Number of extensions: 428336
Number of successful extensions: 1186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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