Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H15
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 176 1e-44
Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical pr... 175 2e-44
Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical pr... 115 3e-26
Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical pr... 113 8e-26
AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine r... 32 0.32
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 30 1.3
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 30 1.3
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 30 1.3
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 30 1.3
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 30 1.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 2.3
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 4.0
Z74033-9|CAN99687.1| 228|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z74033-8|CAA98470.1| 218|Caenorhabditis elegans Hypothetical pr... 28 5.3
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 28 5.3
AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical ... 28 7.0
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 176 bits (428), Expect = 1e-44
Identities = 81/156 (51%), Positives = 113/156 (72%)
Frame = +2
Query: 206 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAI 385
+P A+YGGRH V LPG GIGPE + ++R+IF + AP++FE V + ++ D D+ A+
Sbjct: 27 LPLAKYGGRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDGDMDAAM 85
Query: 386 TTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVI 565
I+RNGV +KGNIETK + SRNV LR +LD+YA IL+C + P V TRH ID+V+
Sbjct: 86 LAIERNGVAIKGNIETKHDDPQFNSRNVELRTKLDLYANILHCVTIPTVPTRHSGIDIVL 145
Query: 566 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSXRVA 673
IR+NTEGEY+ LEHE+V G+VES+K+VT + R++
Sbjct: 146 IRENTEGEYSGLEHEAVPGIVESIKIVTREKIERIS 181
>Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical
protein F35G12.2 protein.
Length = 396
Score = 175 bits (426), Expect = 2e-44
Identities = 93/193 (48%), Positives = 129/193 (66%), Gaps = 5/193 (2%)
Frame = +2
Query: 107 VRGSVHLSSKAAPATLSDFDV-QHKPPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMG 283
+R S ++ KA AT + D+ + + PV++ A+YGGRH VT+LPG GIGPE +
Sbjct: 10 LRSSKNVVQKAFVATSPNSDMLRFRSPVLQTNTT-KLARYGGRHNVTVLPGDGIGPEMLH 68
Query: 284 YVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSR 463
+V I + AP+DFEVV++ D +D+ AIT IKRNGV LKGNIETK + SR
Sbjct: 69 HVERILSAVQAPVDFEVVNLTSKEDASEDLAEAITAIKRNGVALKGNIETKFDNPSFVSR 128
Query: 464 NVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVNG----VVE 631
N+ LR +L++YA +L+C + P V +RH ID+VIIR+NTEGEY+ EHE+VN VVE
Sbjct: 129 NLELRRQLNLYANVLHCSTIPTVPSRHTGIDMVIIRENTEGEYSGNEHEAVNAPHPRVVE 188
Query: 632 SMKVVTADNSXRV 670
S+KVVT + S ++
Sbjct: 189 SLKVVTREKSEQI 201
>Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical
protein F43G9.1 protein.
Length = 358
Score = 115 bits (277), Expect = 3e-26
Identities = 64/153 (41%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Frame = +2
Query: 224 GGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQY---AITTI 394
G VT++PG GIGPE V+ IF+ API ++ VD+ P D + I +
Sbjct: 22 GDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGVFRIPSRCIELM 81
Query: 395 KRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQ 574
N VGLKG +ET + S N+A+R E +YA + C+S G T + ++DVV IR+
Sbjct: 82 HANKVGLKGPLETPIGKGH-RSLNLAVRKEFSLYANVRPCRSLEGHKTLYDNVDVVTIRE 140
Query: 575 NTEGEYAMLEHESVNGVVESMKVVTADNSXRVA 673
NTEGEY+ +EHE V GVV+S+K++T S VA
Sbjct: 141 NTEGEYSGIEHEIVPGVVQSIKLITETASRNVA 173
>Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical
protein C37E2.1 protein.
Length = 379
Score = 113 bits (273), Expect = 8e-26
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 6/161 (3%)
Frame = +2
Query: 209 PKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPT-MDNDDDVQYAI 385
P + + VT++PG G+GPE + V+DI K G PI+FE + + ++ A+
Sbjct: 35 PPTELNQKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYTRSSSIENAV 94
Query: 386 TTIKRNG-VGLKGNIETKS---EAAYVTSRNVALRNELDMYAYILNCKSYPGVATRH-KD 550
+I RN V LKG IE + + N+ LR LD++A +++ K+ G+ TRH K
Sbjct: 95 ESIGRNNNVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQ 154
Query: 551 IDVVIIRQNTEGEYAMLEHESVNGVVESMKVVTADNSXRVA 673
+D VI+R+ TEGEY+ LEHE V GV+E +K+ T + R+A
Sbjct: 155 LDFVIVREQTEGEYSSLEHELVPGVIECLKISTRTKAERIA 195
>AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine
receptor, class h protein190 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 269 PECMGYVRDIFKYIGAPIDFEVVDI 343
PE GY IFKY AP+++ VV++
Sbjct: 79 PELAGYPLGIFKYFNAPVEYYVVEV 103
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 571
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 209
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 571
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 209
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 571
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 174 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 208
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 387
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 571
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 173 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 207
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 383
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 464 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 571
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 169 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 203
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = -3
Query: 489 SSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAP 310
SS+ + T+ T S L L SPTP +V++ +S S S V + + T + G P
Sbjct: 434 SSTIVSTTITPSTPKVSTLT--LSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVP 491
Query: 309 MYLNMSRTYPMHSGPIPPPGSMVTA 235
+ T P S P P S VTA
Sbjct: 492 TSTSNQPT-PSTSNPTTPK-STVTA 514
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 666 LSELSAVTTFIDSTTPFTDSCSNIAYSPS 580
++ S+ TTF+ +TTP + + SNI+ + S
Sbjct: 159 IANCSSTTTFLSTTTPVSSTTSNISLTSS 187
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +2
Query: 113 GSVHLSSKAAPATLSDFDVQHKPPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVR 292
G HL K + + H V++ L+ + H +L G G V+
Sbjct: 341 GRAHLPRKMSMIKTGRHRLGHTRDVVQ---LMERIVVCVSHNEPLLLVGETGVGKTSVVQ 397
Query: 293 DIFKYIGAPIDFEVVDIDPTMDNDDDVQ-YAITTIKR 400
+ IG +D VV++ PT D+D+ +Q Y TTI R
Sbjct: 398 AVADLIGVTLD--VVNVSPTSDSDELIQGYKPTTIGR 432
>Z74033-9|CAN99687.1| 228|Caenorhabditis elegans Hypothetical
protein F38B7.2b protein.
Length = 228
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/91 (24%), Positives = 32/91 (35%)
Frame = -3
Query: 492 MSSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGA 313
M S F R + F P FLL+ + +W + + M +
Sbjct: 119 MKSLFYRCHFAQTCMGLECKIDSRLFVPPIFLLIFISIFWCFKRM-LRRDMKRVERQTSF 177
Query: 312 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 220
+ M T P H P PP + +A PPY
Sbjct: 178 HI---MDPTNPAHRSPPPPYNAQNSAIPPPY 205
>Z74033-8|CAA98470.1| 218|Caenorhabditis elegans Hypothetical
protein F38B7.2a protein.
Length = 218
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/91 (24%), Positives = 32/91 (35%)
Frame = -3
Query: 492 MSSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGA 313
M S F R + F P FLL+ + +W + + M +
Sbjct: 109 MKSLFYRCHFAQTCMGLECKIDSRLFVPPIFLLIFISIFWCFKRM-LRRDMKRVERQTSF 167
Query: 312 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 220
+ M T P H P PP + +A PPY
Sbjct: 168 HI---MDPTNPAHRSPPPPYNAQNSAIPPPY 195
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 363 SLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPI-PPPGSMVTA*RPPYCALGIS 202
++ I GS+ +++ S P Y + S + S P+ PPP T P Y A IS
Sbjct: 138 NMHIGGSVMSSNSSTATPSYQSNSTSSYSSSAPVAPPPVPRHTQSIPSYSAPAIS 192
>AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical
protein Y37E11AL.2 protein.
Length = 215
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 403 VPLNGRYSILDIIIIVHRWVNVHHFEVNRSTDVFEYVANVSHALRTDTASREHGH 239
VP G + + + + W+N+H + RS VANV + +R HGH
Sbjct: 59 VPAVGSVLSVLLSLFTYEWLNLHFSSMTRSRRACFDVANVLETYQ--PRARTHGH 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,854
Number of Sequences: 27780
Number of extensions: 355297
Number of successful extensions: 997
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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