Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H14
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 34 0.023
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.030
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 32 0.091
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 31 0.16
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 29 0.49
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 28 1.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 28 1.1
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.0
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 2.6
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 3.4
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 27 3.4
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 4.5
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 6.0
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.9
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 7.9
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|... 25 7.9
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 33.9 bits (74), Expect = 0.023
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 361 ENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYKIHSEIDTLNK 540
+N A + + N N + I + K +++ +LQEL++QL + K ++I+TLN+
Sbjct: 777 KNTIREAELSKKALNDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDK--NQIETLNE 834
Query: 541 NLEKSFDNVPGY-SLVKNR-NDL 603
+ + D + S+ KN+ N+L
Sbjct: 835 RISAAADELSSMESINKNQANEL 857
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 33.5 bits (73), Expect = 0.030
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Frame = +1
Query: 394 RFFNQNNSEDISDIGEAKIII----ADLKRKLQ-ELENQLERYKIHSEIDTLNKNLEKSF 558
R Q N ED ++I ++K+ + + L R+++ +++ + I SE+++ E
Sbjct: 285 RVEKQQNDEDYTNIMKSKVALELQSSQLSRQIEFSKKDESSKLNILSELESKISEKENEL 344
Query: 559 DNV-PGYSLVKNRNDLINKEVQTLFGNEHKLLSK 657
+ P Y+ + + D +NK + L + LL K
Sbjct: 345 SEILPKYNAIVSEADDLNKRIMLLKNQKQSLLDK 378
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 31.9 bits (69), Expect = 0.091
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 577 CIQVHCQSFFPSFY*VCQFLNEFYIFPI 494
C VHC SFFPSF V ++ + ++ P+
Sbjct: 134 CFDVHCNSFFPSF--VLLYVIQLFLLPV 159
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +1
Query: 367 VTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYKIHSEIDTLNKNL 546
+ NG +D+ + E ++ +G + + +R+ +E +N LER++I+ E ++KNL
Sbjct: 84 IQNGL-IDDPTKPRQLDEAVTFVGTCPDMCPEYEREQREYQNNLERWEINPETGRVDKNL 142
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 29.5 bits (63), Expect = 0.49
Identities = 21/99 (21%), Positives = 43/99 (43%)
Frame = +1
Query: 379 ANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYKIHSEIDTLNKNLEKSF 558
+N N+NNS++ +++ + K + + N + + +T + +
Sbjct: 457 SNRGEAVLNENNSKNRTNVTKPN----SYKNSVLSIGNNHSNHSNIIKPNTYKNTILSNE 512
Query: 559 DNVPGYSLVKNRNDLINKEVQTLFGNEHKLLSKPVINFP 675
+N P YS V LIN+ + +L H ++K +I P
Sbjct: 513 NNTPNYSNVCLSTSLINRSLPSLKSTMHPGVNKDLITRP 551
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 349 IVNQENVTNGANVDNRFFNQNNSEDISDIG 438
++ N T DNR FN+ NSE S++G
Sbjct: 20 LIQSNNSTRRGFSDNRKFNERNSEASSNVG 49
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 28.3 bits (60), Expect = 1.1
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +1
Query: 307 LQSSAWPPDKDSNRIV-----NQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKR 471
LQ WP KD+NR EN + VD+ + S DI +A+ ++ DL
Sbjct: 667 LQKIDWPSSKDANRFYLHLGKLSENYIH-YYVDSMYALFIYSTDIP--LKAEPLVPDL-- 721
Query: 472 KLQELENQLERYKIHSEIDTLNKNLEKSFDNVPGYSLVKNRNDLINKEVQTLFGNEHKLL 651
+++L+ + +K HS K +SF + SLV ++++ + ++K+L
Sbjct: 722 PVKQLKEKASHFKRHSGDPNFLKLYRESFTLINTVSLVSGWLKMLHQRI------DYKIL 775
Query: 652 SKPVINFPE 678
++ V++F +
Sbjct: 776 TEKVMHFKD 784
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.0
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +1
Query: 334 KDSNRIVNQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYKI 513
K+ + + + +V G +VD F + EDISDI + L KL EL +Q+ R +
Sbjct: 111 KNMYKEIERLSVILGESVDEVNFVNGDFEDISDIK-----LEQLSAKLNEL-HQIYRLRK 164
Query: 514 HSEIDTLNKNLEKSFDNVPGYSLVKNRNDLINKEVQTLFGNEHKL 648
I+ + + L+K D++ L +DL ++ L + KL
Sbjct: 165 EKNIE-IKEELKKLQDSL-SIKLSMPADDLSKNGIKHLIIYKEKL 207
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 370 TNGANVDNRFFNQNNSEDIS-DIGEAKIII-ADLKRKLQELENQLERYKIHSEIDTLNKN 543
+N N F++ N +S D+ + I+ A EN + I S +D+ N N
Sbjct: 518 SNSGNQSTSSFSRYNQPTVSVDLRNSSILRRAQEPVNGSTGENHIGDDYISSLLDSSNSN 577
Query: 544 LEKSFDNVPGYSLVKNRN 597
++ F VP S V +RN
Sbjct: 578 SQRPFSTVPSESNVFSRN 595
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 16 LQIX*KLIFSFYIRFQGQMLLNWFMSSISENKHLKTVLNPQDLKNLGIQYCTHLLAAGVL 195
LQ+ ++S +FQG + + ++ + +LN +K L I++C + + ++
Sbjct: 125 LQLRDSFVWSMLAKFQGLQTIALDGTGVTISSVTNILLNIPTVKTLSIRWCVGVCSLSLI 184
Query: 196 RQISDKDAPT---ENLF 237
+ + + T ENL+
Sbjct: 185 EFLQNSKSRTFSLENLY 201
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 583 LNCIQVHCQSFFPSFY*VCQFLNEFYIFP 497
++ ++++CQ F P+F+ Q F+ FP
Sbjct: 144 ISVLRMNCQKFLPNFFEKGQLSKMFFCFP 172
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 698 CSXS*SFSGKFITGLLSNLCSLPNSVCTSL 609
CS + + SG I+ +LS LC N C+S+
Sbjct: 383 CSANGTPSGSKISQVLSELCYYDNKACSSI 412
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 157 IQYCTHLLAAGVLRQISDKDA--PTENLFKPNLMYYWAHMEVPPS 285
+Q + AG+L I+D + P EN+ N ++ W +PP+
Sbjct: 697 VQQAKNTNKAGLLILITDGEFINPLENIHSQNSLFNWVKPYIPPT 741
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 197 LSTPAARRCVQYCIPRFFKSCGFNTVLRCLFSDID 93
+S P A +C+ YC +FK + C + ID
Sbjct: 335 ISYPIALQCLIYCSNPYFKRLELALKVSCAYGHID 369
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 307 LQSSAWPPDKDSNRIVNQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQEL 486
L S +WP D+N N +N ++ +S+ K+ AD LQEL
Sbjct: 79 LYSPSWPSLADAN--------VNSMKSNNAIQEHKAAKFVSEKSLEKVSTADNNLVLQEL 130
Query: 487 ENQLER 504
EN ER
Sbjct: 131 ENLRER 136
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 526 DTLNKNLEKSFDNVPGYS-LVKNRNDLINKEVQTLFGNEHKL 648
++L + L +N P Y V N +I EVQT+F E L
Sbjct: 977 ESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKAL 1018
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 475 LQELENQLERYKIHSE-IDTLNKNLEKS 555
L ELE+++ER+K H + ++ + + LE S
Sbjct: 155 LSELESRIERHKWHQDKLELIMRRLENS 182
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +1
Query: 394 RFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYKIH 516
R F + + I +GE+ + ++++K+ L+ + K+H
Sbjct: 2 RLFGNSKEQGICQVGESDVAVSEIKKDEALLQKMGYKPKLH 42
>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 152 RFFKSCGFNTVLRCLFSDIDDINQFRSIXPWK 57
+ F+ GF V C+ +D+N+ I PW+
Sbjct: 38 QLFEQMGFPNVETCVSGFPEDLNKSMYITPWE 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,790
Number of Sequences: 5004
Number of extensions: 57704
Number of successful extensions: 200
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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