Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H14
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699... 33 0.17
12_02_0241 + 16190408-16191103 29 2.7
04_03_0799 - 19805190-19805749,19806316-19806403 29 2.7
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 29 2.7
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 29 3.6
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 29 3.6
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 4.7
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204... 28 6.2
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 28 6.2
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 28 6.2
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 8.3
01_01_0955 - 7494486-7496327 28 8.3
>12_02_0937 - 24568475-24569145,24569215-24569319,24569419-24569991,
24570480-24570780,24570867-24572039,24572260-24572328
Length = 963
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 331 DKDSNRIVNQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYK 510
DK + V +T+ NV+ N E + K IA L+ KLQ++E+ R +
Sbjct: 831 DKVESSCVALAALTSQYNVERAVEEGNKRECSRQAQKIKAEIAMLQAKLQQVEDDYSRAQ 890
Query: 511 IHSE--IDTLNKNLEK 552
H + I+ LN +LE+
Sbjct: 891 CHQDVVIENLNSHLER 906
>12_02_0241 + 16190408-16191103
Length = 231
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +1
Query: 313 SSAWPPDKDSNRIVNQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELEN 492
SS DK+S R N N+ GANV N SE++ + G A L + ++ E
Sbjct: 142 SSTMSMDKESRRDNNNNNLAIGANVG----NNGESEEVEEQGGA----ISLGKVIE--EE 191
Query: 493 QLERYKIHSEIDTLNKNLE 549
+E + D LN+ +E
Sbjct: 192 MIEEEDVGLPTDELNRRVE 210
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 329 GGHAELCNLPGVTGCEGGTSI 267
GGH CN P V+ C GG SI
Sbjct: 144 GGHGGGCNKPAVSPCGGGCSI 164
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 277 PPSQPVTPGRLQSSAWP---PDKDSNRIVNQENVTNGANVDNRFFNQNNSEDISD 432
P + P + +S+ P D+NR +N +N N D FNQ +SE +D
Sbjct: 295 PIADPQDENAVATSSSPHVVESSDANRQMNNKNSDNDGATDVHDFNQTDSESCAD 349
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 329 GGHAELCNLPGVTGCEGGTSI 267
GGH CN P V C GG SI
Sbjct: 141 GGHGGGCNKPAVPPCAGGCSI 161
>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +1
Query: 427 SDIGEAKIIIADLKRKLQELENQLERYKIHSEIDTLNKNLEKSFDNVPGYSLVKNRNDLI 606
SD + + A+ + + LEN + +H + L ++ FD++ ++ +D++
Sbjct: 1482 SDSDQMVLERAEKLKAERNLENLQSKSNVHDNVSFLEFTNDQIFDSLKNLGVITTSSDVL 1541
Query: 607 NKEVQTLFGNEHKLLSKPV 663
+ + L E K LS+ V
Sbjct: 1542 DDVINDLKCVEKKRLSEHV 1560
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Frame = +1
Query: 337 DSNRIVNQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQE----LENQLER 504
DS ++ ++N+ N + S +SD + KIIIA+L +L L+N+ E
Sbjct: 377 DSELLIEKDNLLNQ-------LEEKLSAALSDTSKNKIIIAELNNELDTNRTMLDNEAEA 429
Query: 505 YKIHSEI-DTLNKNLEKSFDNVPGYSLVKNRNDLINKEVQT 624
+K SEI + L D V S NR + N+++ T
Sbjct: 430 HKKLSEILQSTEGALTDYRDKVFNLSEELNRVKISNQQLIT 470
>05_01_0266 -
2040555-2040722,2041248-2041349,2041461-2041958,
2042372-2042479,2042559-2042753
Length = 356
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 331 DKDSNRIVNQENVTNGANVDNRFFNQNNSEDISDIGEAKIIIADLKRKLQELENQLERYK 510
D + +I++ + N N+ N+ N ++E E +I+ A K +ELE+QLE+ K
Sbjct: 214 DNELLKILSDVSPRNIDNL-NKLLNAKDAEIARLRDEIRILSAHWTNKTKELESQLEKQK 272
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 499 ERYKIHSEIDTLNKNLEKSFD--NVPGYSLVKNRNDLINKEVQTLFGNEHKLLSKP 660
ERY + +D+L + E SFD NVP S + + ++ EV + N S P
Sbjct: 303 ERYLSRNAVDSLLEGKESSFDHHNVPDTSSSGSSQNCVSGEVNSRQSNRPSSNSSP 358
>02_03_0273 +
17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 487 ENQL--ERYKIHSEIDTLNKNLEKSFDNVPGYSLVKNRNDLINKEVQTLFGNEHKLLS 654
EN++ ++Y+ H E+ + LE+ + + Y K+ +++ +E+Q L H +LS
Sbjct: 708 ENKILHQKYENHPEVLSAKIELERIQEELERYRNFKDEKEVLLEEIQHLKNQLHYMLS 765
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 442 AKIIIADLKRKLQELENQLERYKIHSEIDTLN-KNLEKSF-DNVPGYS 579
++III + RK++++E ++E K + L + L+K DN PG++
Sbjct: 393 SEIIIMERDRKIRQMEKEMEELKKQRDNAQLKLEELQKKMGDNQPGWN 440
>01_01_0955 - 7494486-7496327
Length = 613
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 403 NQNNSEDISDIGEAKIIIADLKRKLQELENQLERYKIHSEIDTLNKNLEKSFD 561
N + + S +G+A I DL++KL+E+E + ER ID ++ D
Sbjct: 484 NISKMDKASLLGDAITYITDLQKKLKEMEVERERLIESGMIDPRDRTPRPEVD 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,779
Number of Sequences: 37544
Number of extensions: 333121
Number of successful extensions: 923
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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