Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H14
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.23 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 475 LQELENQLERYKIHSEIDTLNKNLEKSFDNVPGYSLVKNRNDL-INKEVQTLFGNEHKLL 651
           L  ++N L+ Y    EI   N+N+ ++ D+     +    NDL IN+E +T+   +   +
Sbjct: 397 LYNVKNTLDSYNGSMEI---NQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRM 453

Query: 652 SKPVINFPEND 684
            K   N+ + +
Sbjct: 454 YKSYPNYIDKE 464


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 340 SNRIVNQENVTNGANVDNRFFNQNNS 417
           SN+ ++  N  N  N +N + N NN+
Sbjct: 319 SNKTIHNNNNYNNNNYNNNYNNYNNN 344


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 340 SNRIVNQENVTNGANVDNRFFNQNN 414
           SN+ ++  N  N  N +N  +N NN
Sbjct: 86  SNKTIHNNNNYNNNNYNNYNYNNNN 110


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 364 NVTNGANVDNRFFNQNN 414
           +++N  N  N ++N NN
Sbjct: 306 SLSNSCNYSNNYYNNNN 322


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 343 NRIVNQENVTNGANVDNRFFNQNNSE 420
           N ++      N  N DN  +N N+++
Sbjct: 406 NDLIRNSRCANFDNQDNNHYNHNHNQ 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,116
Number of Sequences: 438
Number of extensions: 4439
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)