Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H12
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I...   131   1e-31
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    29   0.49 
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   6.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.0  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.9  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   7.9  

>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
           subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  131 bits (316), Expect = 1e-31
 Identities = 61/84 (72%), Positives = 71/84 (84%)
 Frame = +3

Query: 255 QAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCSPVMVELEGETDPLQIAMKELKHG 434
           Q+G  V K  R TT YMTKYERAR+LGTRALQI+M +PV+V+LEGETDPLQIAMKEL   
Sbjct: 59  QSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQK 118

Query: 435 KIPIIIRRYLPDHSYEDWSIDELI 506
           KIP+++RRYLPD SYEDWS+ ELI
Sbjct: 119 KIPLLVRRYLPDGSYEDWSVAELI 142


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 424 NSFMAICNGSVSPSSSTMTGEHIAICKALVPKTLARSYLVMYRVVIRLD 278
           +SF  + +   SPSSS +   +I +C   +P+ L  S L    +V+ LD
Sbjct: 263 SSFTIVNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLD 311


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 31  SSVFLLCSSQSXSKRCFNQFLQSHP 105
           + VF  CSS+  S RC  QFL   P
Sbjct: 121 ADVFQACSSKDPSGRCVLQFLSVLP 145


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 222 DGYNVQCLALGQAGGG 269
           DGYNV   A GQ G G
Sbjct: 565 DGYNVSIFAYGQTGSG 580


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 643 IFEFQYLIYIYDDEIK 596
           IF+F YL+YIY D  K
Sbjct: 58  IFQFSYLLYIYIDLTK 73


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 174 IAEXXDNIEXTEXQEEDGYNVQCLALGQ--AGGGVDKSKRITTRYMTKYERARVL 332
           IAE  +  E  E QEED  + + +  G    G   DK   +    + KYE   V+
Sbjct: 339 IAEEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDADKEASVARATINKYEDDEVI 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,617
Number of Sequences: 5004
Number of extensions: 43556
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)