Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H12
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27113-1|CAA81629.1| 127|Homo sapiens RNA Polymerase II subunit... 151 3e-36
CR457021-1|CAG33302.1| 127|Homo sapiens POLR2F protein. 151 3e-36
CR456546-1|CAG30432.1| 127|Homo sapiens POLR2F protein. 151 3e-36
BC003582-1|AAH03582.1| 127|Homo sapiens polymerase (RNA) II (DN... 151 3e-36
AL031587-2|CAB62981.1| 127|Homo sapiens polymerase (RNA) II (DN... 151 3e-36
BC016851-1|AAH16851.1| 238|Homo sapiens cell death-inducing DFF... 31 3.0
AY364638-1|AAR23106.1| 133|Homo sapiens cell death activator CI... 31 3.0
AF303893-1|AAN32612.1| 238|Homo sapiens cell death activator CI... 31 3.0
>Z27113-1|CAA81629.1| 127|Homo sapiens RNA Polymerase II subunit
14.4 kD protein.
Length = 127
Score = 151 bits (365), Expect = 3e-36
Identities = 78/113 (69%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 EXXDNIEXTEXQEEDGY-NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIA 356
E + ++ E EE+G NV+ L G+ KRITT YMTKYERARVLGTRALQIA
Sbjct: 17 EEDEGLDDLENAEEEGQENVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIA 74
Query: 357 MCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
MC+PVMVELEGETDPL IAMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 75 MCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>CR457021-1|CAG33302.1| 127|Homo sapiens POLR2F protein.
Length = 127
Score = 151 bits (365), Expect = 3e-36
Identities = 78/113 (69%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 EXXDNIEXTEXQEEDGY-NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIA 356
E + ++ E EE+G NV+ L G+ KRITT YMTKYERARVLGTRALQIA
Sbjct: 17 EEDEGLDDLENAEEEGQENVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIA 74
Query: 357 MCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
MC+PVMVELEGETDPL IAMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 75 MCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>CR456546-1|CAG30432.1| 127|Homo sapiens POLR2F protein.
Length = 127
Score = 151 bits (365), Expect = 3e-36
Identities = 78/113 (69%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 EXXDNIEXTEXQEEDGY-NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIA 356
E + ++ E EE+G NV+ L G+ KRITT YMTKYERARVLGTRALQIA
Sbjct: 17 EEDEGLDDLENAEEEGQENVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIA 74
Query: 357 MCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
MC+PVMVELEGETDPL IAMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 75 MCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>BC003582-1|AAH03582.1| 127|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide F protein.
Length = 127
Score = 151 bits (365), Expect = 3e-36
Identities = 78/113 (69%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 EXXDNIEXTEXQEEDGY-NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIA 356
E + ++ E EE+G NV+ L G+ KRITT YMTKYERARVLGTRALQIA
Sbjct: 17 EEDEGLDDLENAEEEGQENVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIA 74
Query: 357 MCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
MC+PVMVELEGETDPL IAMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 75 MCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>AL031587-2|CAB62981.1| 127|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide F protein.
Length = 127
Score = 151 bits (365), Expect = 3e-36
Identities = 78/113 (69%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = +3
Query: 180 EXXDNIEXTEXQEEDGY-NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIA 356
E + ++ E EE+G NV+ L G+ KRITT YMTKYERARVLGTRALQIA
Sbjct: 17 EEDEGLDDLENAEEEGQENVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIA 74
Query: 357 MCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
MC+PVMVELEGETDPL IAMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 75 MCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>BC016851-1|AAH16851.1| 238|Homo sapiens cell death-inducing
DFFA-like effector c protein.
Length = 238
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 340 LVPKTLARSYLVMYRVVIRLDLSTPPPACPKARHC 236
L PK+L+R V VV + LS P P P+AR C
Sbjct: 11 LYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPC 45
>AY364638-1|AAR23106.1| 133|Homo sapiens cell death activator
CIDE-3 beta protein.
Length = 133
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 340 LVPKTLARSYLVMYRVVIRLDLSTPPPACPKARHC 236
L PK+L+R V VV + LS P P P+AR C
Sbjct: 11 LYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPC 45
>AF303893-1|AAN32612.1| 238|Homo sapiens cell death activator
CIDE-3 protein.
Length = 238
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 340 LVPKTLARSYLVMYRVVIRLDLSTPPPACPKARHC 236
L PK+L+R V VV + LS P P P+AR C
Sbjct: 11 LYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPC 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,966,468
Number of Sequences: 237096
Number of extensions: 1450066
Number of successful extensions: 6411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6411
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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