Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H12
         (703 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47726-1|CAA87655.1|  131|Drosophila melanogaster RNA polymerase...   176   3e-44
BT001786-1|AAN71541.1|  131|Drosophila melanogaster RH21608p pro...   176   3e-44
AE014297-233|AAF52039.1|  131|Drosophila melanogaster CG1163-PA ...   176   3e-44
AY060386-1|AAL25425.1|  342|Drosophila melanogaster LD29048p pro...    29   6.1  
AE014296-1150|AAS65069.1|  342|Drosophila melanogaster CG32393-P...    29   6.1  
AE014296-1149|AAF50647.2|  342|Drosophila melanogaster CG32393-P...    29   6.1  

>Z47726-1|CAA87655.1|  131|Drosophila melanogaster RNA polymerase
           subunit protein.
          Length = 131

 Score =  176 bits (428), Expect = 3e-44
 Identities = 83/110 (75%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
 Frame = +3

Query: 189 DNIEXTEXQEEDGYNVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCS 365
           ++++    QEE+  N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMC+
Sbjct: 21  EDVDEDINQEEEADNIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCA 80

Query: 366 PVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
           P+MVEL+GETDPLQIAMKELK  KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 81  PIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>BT001786-1|AAN71541.1|  131|Drosophila melanogaster RH21608p
           protein.
          Length = 131

 Score =  176 bits (428), Expect = 3e-44
 Identities = 83/110 (75%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
 Frame = +3

Query: 189 DNIEXTEXQEEDGYNVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCS 365
           ++++    QEE+  N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMC+
Sbjct: 21  EDVDEDINQEEEADNIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCA 80

Query: 366 PVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
           P+MVEL+GETDPLQIAMKELK  KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 81  PIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>AE014297-233|AAF52039.1|  131|Drosophila melanogaster CG1163-PA
           protein.
          Length = 131

 Score =  176 bits (428), Expect = 3e-44
 Identities = 83/110 (75%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
 Frame = +3

Query: 189 DNIEXTEXQEEDGYNVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCS 365
           ++++    QEE+  N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMC+
Sbjct: 21  EDVDEDINQEEEADNIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCA 80

Query: 366 PVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
           P+MVEL+GETDPLQIAMKELK  KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 81  PIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>AY060386-1|AAL25425.1|  342|Drosophila melanogaster LD29048p
           protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 348 QIAMCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYL 464
           Q+A+   ++V L    D LQ   KE+ H    + +RR+L
Sbjct: 55  QVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFL 93


>AE014296-1150|AAS65069.1|  342|Drosophila melanogaster CG32393-PB,
           isoform B protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 348 QIAMCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYL 464
           Q+A+   ++V L    D LQ   KE+ H    + +RR+L
Sbjct: 55  QVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFL 93


>AE014296-1149|AAF50647.2|  342|Drosophila melanogaster CG32393-PA,
           isoform A protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 348 QIAMCSPVMVELEGETDPLQIAMKELKHGKIPIIIRRYL 464
           Q+A+   ++V L    D LQ   KE+ H    + +RR+L
Sbjct: 55  QVALVPELIVRLLKGCDALQTVAKEITHSNYQMFLRRFL 93


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,629,468
Number of Sequences: 53049
Number of extensions: 461412
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)