Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H12
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical pr...   132   2e-31
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    27   9.8  

>Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical
           protein C06A1.5 protein.
          Length = 137

 Score =  132 bits (319), Expect = 2e-31
 Identities = 66/104 (63%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
 Frame = +3

Query: 207 EXQEEDGYNV-QCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCSPVMVEL 383
           + ++ED  NV +   L   G  V  S+ +TT +MTKYERARVLGTRALQIAM +PVMVEL
Sbjct: 33  DNEDEDDDNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVEL 92

Query: 384 EGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 515
           EGETDPL+IA KELK  +IPII+RRYLPD SYEDW  D+L + D
Sbjct: 93  EGETDPLEIARKELKQRRIPIIVRRYLPDGSYEDWPTDQLQLAD 136


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 672 KKFNLSINSKYLSFNT*FTFMMMRLNSILK 583
           KK N  +NS+YL      + M + LNS+L+
Sbjct: 225 KKINYDLNSQYLKVEQHHSLMAVSLNSLLQ 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,520
Number of Sequences: 27780
Number of extensions: 243770
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)