Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H11
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   0.64 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.0  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   7.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 267 EPISVDAVVFVIVMSCLSVAESPMDSLTF 181
           +P+  D V F++  +C+S+A + + +  F
Sbjct: 160 QPVVFDLVYFILAFACISIAYTNVSTDAF 188


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 545  SRMATSRITLASDATANTPTMGNPATDTDHRVSXLCIF 658
            S MA S   +  D    T T     TDT      +C F
Sbjct: 2290 STMAPSTTPMVPDKPVTTTTSRPIGTDTSDDYKVVCYF 2327


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 175 SWPLPLEGHLRNHEG 131
           S P  L+GH+R H G
Sbjct: 18  SRPWLLQGHIRTHTG 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,547
Number of Sequences: 336
Number of extensions: 2936
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)