Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H11
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    31   0.13 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.40 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.53 
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   8.6  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 280 ENPLRTHF--RGCCRLRDRHVLLVRGRKPHG 194
           E PL THF  +   R+RDRH  L+ G K HG
Sbjct: 266 ELPLHTHFVAKKQGRIRDRHFWLLHGLKSHG 296


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 22/66 (33%), Positives = 24/66 (36%)
 Frame = +1

Query: 112 NAGXPQGPHGFGGAPQVVAARTLEGQGIHGAFGHGQAGHDDHEDDSIHGNGFARGSHHGH 291
           + G P GP GFGG             G HG FG G  G +        G G   G   G 
Sbjct: 197 SGGPPPGPGGFGGFGGFGGEG--HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 292 GFGAQG 309
           G G  G
Sbjct: 255 GGGPGG 260


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 109  SNAGXPQGPHGFGGAPQVVAARTLEGQGIHGAFGHGQAGHDDHEDDSIHGNGFARG-SHH 285
            SN     GP GFGG  +    + +   GI   F    AG       S + +  +RG SHH
Sbjct: 882  SNTHSHAGP-GFGGPSE---RKGISRLGIDRGFSSSGAGFGS---GSNYKSAPSRGVSHH 934

Query: 286  GHGFGAQGRHADQQ 327
            GHG G  G H   Q
Sbjct: 935  GHG-GMSGSHRGSQ 947


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 512 VSMATTTATIRSRMATSRITLASDATANTPTMGNPAT 622
           VS+A+T++     M  +R+  AS   ANT    NP T
Sbjct: 633 VSIASTSSKSNVEMEDTRLLPASLELANTQGASNPPT 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,519
Number of Sequences: 5004
Number of extensions: 46212
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)