Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H11
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.3  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 538 DSESHGDFSHHAGFGRNGEHAHNGK 612
           ++ ++GD   H G G  G H   G+
Sbjct: 265 NNNNNGDMFCHTGLGHYGHHPDPGE 289



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 199 GAFGHGQAGHDDHEDDSIHGNGFARGSHHGHG 294
           G    G + H D  +++  G+     SHH HG
Sbjct: 377 GLMPSGSSVHSDSGENNSRGHSGQSSSHH-HG 407


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 679 IYFKSNTEYTKXRYTVVSI 623
           I F +N  YTK  YTV  +
Sbjct: 434 IIFANNQPYTKDSYTVAGM 452



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 619 NGY*PPCIVXLYIPYSI*SKYG 684
           NGY  P     Y PYS  SK G
Sbjct: 130 NGYASPMSTSSYDPYSPNSKIG 151


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 208 GHGQAGHDDHEDDSIHGNGFARGSHHGHGF 297
           G+G A   +   +S+HG+    G  H + F
Sbjct: 31  GNGNAIVSNSASNSVHGHREGLGRRHRYNF 60


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 208 GHGQAGHDDHEDDSIHGNGFARGSHHGHGF 297
           G+G A   +   +S+HG+    G  H + F
Sbjct: 32  GNGNAIVSNSASNSVHGHREGLGRRHRYNF 61


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 175 SWPLPLEGHLRNHEG 131
           S P  L+GH+R H G
Sbjct: 53  SRPWLLQGHIRTHTG 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 718  IHRVILKFKVNFHIYFKSNTEYTKXRYTVVSIRCG 614
            IH   + +K  F  +  +    T  +YT+ ++ CG
Sbjct: 1396 IHGYTIHYKPEFGDWDTAQISSTVQKYTLENLLCG 1430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,056
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)