Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H10
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    24   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   3.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.2  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 517 ISTLSSTLSKEVCFFSYICL*THV 446
           ++ L+S+++  VCF SY+   TH+
Sbjct: 51  LTILTSSVTLHVCFNSYMYAFTHI 74


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 405 LKIRNISNGDAGNYTCV 455
           L I N+ +   GNYTC+
Sbjct: 663 LSIDNVQSTHVGNYTCL 679


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
 Frame = +3

Query: 456 YKQMYEKKQTSLLKVEDSVDIPTH--------APYFPNSNFVNELRITTPDVVSENIXTM 611
           Y +M+ ++Q + + V   V IP H         P  PN  +  +    TP        T 
Sbjct: 4   YDKMFNQEQNNNVPVVLDV-IPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTS 62

Query: 612 NINVTD 629
           ++NV D
Sbjct: 63  SVNVND 68


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 571 ILNSFTKFEF 542
           I NSFTKFEF
Sbjct: 444 ICNSFTKFEF 453


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 216 KVEKYTKNEQGIETLHAELPPQHIQQRLLNNV 311
           KV  Y  N         +  P+HI QRL  +V
Sbjct: 638 KVVCYMTNWAFYRKAEGKFVPEHIDQRLCTHV 669


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,231
Number of Sequences: 336
Number of extensions: 3173
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)