Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H10
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   1.9  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   2.6  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    26   5.9  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   7.9  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   7.9  
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    25   7.9  

>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 174 SDVRFKCEAYINFTKVEKYTKNEQGIETLHAELPPQHIQQRLL 302
           S V    +   N+T+   Y KN +  +  + E P QH QQ+++
Sbjct: 222 SGVHRSIDVVRNYTRSNAYNKNNKDQKPKNHEAPHQHPQQKVV 264


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 492 LKVEDSVDIPTHAPYFPNSNFVNELRITTPDVVSEN 599
           L    S  IPT +PY  N  +  +L ++TP +V  N
Sbjct: 846 LNYSKSGRIPTGSPYIMNGQWRKDLCVSTPPMVDIN 881


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 441 NYTCVYKQMYEKKQTSLLKVEDSVDIPTHAP---YFPNSNF 554
           NY   YK  Y+K+   L K  D ++IP   P   Y+  +NF
Sbjct: 301 NYYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANF 341


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 481 KLPYSKLKIVLIYPPMHHIF 540
           +L +SK++ V ++ P HHIF
Sbjct: 62  QLDFSKIQRVFVFGPSHHIF 81


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 492 LKVEDSVDIPTHAPYFPNSNFVNELRITTPDVVSENIXTMNINVTDSPNI 641
           L  +DS   P  AP  PN + +     T  D+++ENI T++      P +
Sbjct: 232 LDKQDSPLPPDDAPELPNISKLKPKFHTLLDMLAENIHTLHSLTNAGPEV 281


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +3

Query: 159 TRSPGSDVRFKCEAYINFTKVEKY 230
           T +PGS+ +  CE+++++ + E++
Sbjct: 122 TINPGSEEKICCESFVSYQRSERF 145


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 VEKYTKNEQGIETLHAELPPQHIQQRLLNNVKVYWLKNNKSI 344
           +E++TK+   +   H+E PP   ++ L  NV    L+  K++
Sbjct: 96  IEQFTKHV--LSAAHSEFPPSSEKETLQKNVDTSILREMKTL 135


>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 9   TVLVMCLCLHXIHSSSEXKTESISPIXLNSTSE 107
           T L++  CL+ + SSS+   + + P+ + S  E
Sbjct: 18  TDLLVAQCLYDLESSSKDMAKELRPLQITSARE 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,929
Number of Sequences: 5004
Number of extensions: 48518
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)