Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H10
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076...    31   1.1  
11_01_0148 + 1242454-1242634,1242774-1243648                           30   2.0  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    29   3.5  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    28   6.1  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    28   8.1  

>03_06_0448 -
           34005581-34005655,34005735-34005830,34006669-34007616,
           34007684-34007851,34007908-34008099,34008164-34008346,
           34008414-34008590,34008667-34012074
          Length = 1748

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +3

Query: 417 NISNGDAGNYTCVYKQ-MYEKKQTSLLKVEDSVDIPTHAPYFPNSNFVNELRITTPDVVS 593
           N++ GD G+        M EK +    +   +V+ PTH PY   +       IT  +  S
Sbjct: 576 NLATGDRGSLEATPPVGMEEKDEMPKAQQTCNVEHPTHQPYCQETKAAPSTEITKGE--S 633

Query: 594 ENIXTMNINVTD---SPNIPLQKLEPICQEYVGK 686
             I   N+N  D   +P++P    E +  E + K
Sbjct: 634 SGIVLANVNELDRGRTPDVPNWHEEAVPSEAMEK 667


>11_01_0148 + 1242454-1242634,1242774-1243648
          Length = 351

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 423 SNGDAGNYTCVYKQMYEKKQTSLLK-VEDSVDIPTHAPYFPNSNFVNELRITTPDVVSEN 599
           + G  G  +  Y    +++Q +++K +ED + +P +    P+SN  + +R  T  V  +N
Sbjct: 272 AGGAHGIGSSYYNLQQQQQQAAMVKDLEDIIAVPDYGTLLPSSNKGSSIRSATAGVSQQN 331


>11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,
            1456850-1457206,1457355-1457424,1457527-1457672,
            1457786-1457831,1457910-1457962,1458507-1458651,
            1459268-1459386,1459494-1459565,1459872-1459975,
            1460117-1460173,1460260-1460452,1460535-1460678,
            1460825-1460927,1461444-1461592,1462674-1462728,
            1464037-1464227,1464580-1464701,1464831-1464978,
            1465354-1465423,1465499-1465644,1466097-1466247,
            1466614-1466732,1466807-1466848,1466849-1466961,
            1467496-1467552,1467642-1467834,1468040-1468183,
            1468567-1468665
          Length = 1280

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 411  IRNISNGDAGNYTCVYKQMYEKKQTSLLKVEDSVDIPTHAPYFPNSN 551
            + N   GDAGN + +         T L K  D + + ++AP F N N
Sbjct: 1087 VNNDKGGDAGNGSLLASLAEAAFLTGLEKNSDVIQMASYAPLFVNEN 1133


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 531 PYFPNSNFVNELRITTPDVVSE 596
           P+F N +F+NE++   P V+S+
Sbjct: 204 PFFQNQSFINEIKPLVPKVISK 225


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  ESISPIXLNSTSEWNIKLDIFFSKSLPQHVTRSPGSDV 182
           E + P+ +N   + ++KL   F   +  H T+SPG D+
Sbjct: 502 EQVPPVDINKALKNDLKLHPMF---VSNHTTKSPGKDI 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,135
Number of Sequences: 37544
Number of extensions: 254983
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)