Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H10
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.90 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.90 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 405  LKIRNISNGDAGNYTCVYKQMYEKKQTSLLKVEDSVDIPTHAP 533
            L + N+ + D G+YTC   Q+   +    L    +V +P  AP
Sbjct: 1369 LMLSNLQSQDGGDYTC---QVENAQGNDKLHYTLTVQVPPSAP 1408



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 405 LKIRNISNGDAGNYTCV-YKQMYEKKQTSLLKVE 503
           L I N++   +G+YTCV      E + T+ L+V+
Sbjct: 674 LSITNLAAEHSGDYTCVAANPAAEVRYTAKLQVK 707


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 405  LKIRNISNGDAGNYTCVYKQMYEKKQTSLLKVEDSVDIPTHAP 533
            L + N+ + D G+YTC   Q+   +    L    +V +P  AP
Sbjct: 1365 LMLSNLQSQDGGDYTC---QVENAQGNDKLHYTLTVQVPPSAP 1404



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 405 LKIRNISNGDAGNYTCVYKQM 467
           L I ++S    GNY+CV + +
Sbjct: 670 LMIEHLSPDHNGNYSCVARNL 690


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 435 AGNYTCVYKQMYEKKQTSLLKVEDSVDIPTHAPYFPNSNFVNELRI 572
           AGNYTC   +  +  QT +L +    ++    P F       E  I
Sbjct: 377 AGNYTCHAVRNQDVVQTHVLTIHTIPEVKV-TPRFQAKRLKEEANI 421


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 417 NISNGDAGNYTCVYKQMYEKKQT 485
           NI +   G Y  +YKQM+ +  T
Sbjct: 276 NIDDEFKGTYKTLYKQMWSQNIT 298


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 405  LKIRNISNGDAGNYTCVYKQMYEKKQTSLLKVEDSVDIPTHAP 533
            L I+ +   DAG Y+C  +  +     +   +   V  P H+P
Sbjct: 1331 LFIKEVDRTDAGEYSCYVENTFGHDTVTHQLI---VHAPPHSP 1370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,875
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)