Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H08
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 126 4e-30
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 124 2e-29
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 29 0.99
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 7.0
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.0
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 126 bits (304), Expect = 4e-30
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 4/181 (2%)
Frame = +3
Query: 141 FLIKHPLQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 317
F+ HPLQ++W+LWF + W + L E+ +F TVE+FW ++ I S L DY
Sbjct: 60 FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDY 119
Query: 318 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICG 494
+ F +GIRP WED N GG+W + + K + ++LD WL +VL IGE + E+ G
Sbjct: 120 SYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTG 177
Query: 495 AVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGIHGK--IGFQVHRDTMVKHSSAT 668
V N+R +IA+WT + + +IG + KE LGI K I + H D+ S
Sbjct: 178 VVCNMRKGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDSSKAGSMRA 237
Query: 669 K 671
K
Sbjct: 238 K 238
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 124 bits (298), Expect = 2e-29
Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 4/188 (2%)
Frame = +3
Query: 135 LXFLIKHPLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGH 311
+ F +KHPL W+LWF W E + TF++VE+FW ++++I S L
Sbjct: 32 INFNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKS 91
Query: 312 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEI 488
DY+ F++G+RP WED NK GG+W K + LD WL VL IGE + E+
Sbjct: 92 DYSFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEV 150
Query: 489 CGAVVNVRPKVDKIAIWTADAMKQHATIEIGKKLKEQLGI--HGKIGFQVHRDTMVKHSS 662
G V+N+R ++A+WT + +EIG + K+ L + I F H D+ S+
Sbjct: 151 MGVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDSSKSGST 210
Query: 663 ATKNLYTV 686
K +V
Sbjct: 211 RAKTRMSV 218
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.99
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 605 DTRQDW-FPSTQRH-NG*A*FCDQESIHCLVLAL 700
D Q+W FP TQ++ N FC+Q H L+LAL
Sbjct: 98 DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLAL 131
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.3
Identities = 27/99 (27%), Positives = 46/99 (46%)
Frame = -3
Query: 499 TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 320
T+P +S + S I +TSN N+ S F S + + +S+ I + LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856
Query: 319 A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 203
S W +S + +YN SSTV ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 141 FLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTF 242
F I+ L+ + FY N +NK W N +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 148 SSTRYKTSGVSGFTTMTETKHG 213
++T Y TSG GFTT T+ G
Sbjct: 647 TTTEYTTSGSVGFTTTLATQSG 668
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 336 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 446
+ +WE N G +L +EKK F +DR+W V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,048
Number of Sequences: 5004
Number of extensions: 60474
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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