Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H08
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)                 108   4e-24
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   32   0.46 
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   3.2  
SB_6925| Best HMM Match : DED (HMM E-Value=0.0028)                     29   3.2  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)
          Length = 263

 Score =  108 bits (260), Expect = 4e-24
 Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
 Frame = +3

Query: 333 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 509
           GI PMWED  NK GGRWLI+  K QR +DLDRFWL+ +L LIGE F E S+ +CGAVV +
Sbjct: 2   GIEPMWEDKRNKDGGRWLINTNKNQRQSDLDRFWLETLLCLIGEAFGEYSEGVCGAVVQI 61

Query: 510 RPKVDKIAIWTADAMKQHATIEIGKKLKE 596
           R K DKIA+WT +A  +  T  IG  +++
Sbjct: 62  RNKGDKIAVWTGNATDEEGTRRIGWVIRD 90


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = -2

Query: 419 ISKALFFLKTDKPSSSHLVSIVFPHRTNALLEYCIVMTLAKF 294
           IS+ LFFL+  + +   +VS++F +R++   ++C+   + +F
Sbjct: 88  ISQTLFFLQFTRVTGKGIVSLLFSNRSDLFSKHCLAANIKEF 129


>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1091

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 529 ILSTFGLTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLP 374
           +LSTF   L T     S+F+  + +  +   N ++ + ++R  F + + HLP
Sbjct: 690 LLSTFVNRLFTVSSFESDFALVTDVDGKKGKNISMPEGIRREQFVQWVEHLP 741


>SB_6925| Best HMM Match : DED (HMM E-Value=0.0028)
          Length = 229

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 378 RWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVR 512
           R + +L  K  F  + RF  D++   IG+ +ENS  +  A+  VR
Sbjct: 24  RSISTLLTKDNFKAMKRFLYDIISTKIGDRYENSLNLFEALSQVR 68


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 273 HHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQR 410
           H +K   +LR+  D+    +    + +D   ++ G  LISLEK QR
Sbjct: 81  HGVKTTKDLREIIDFVPSVEAGENLLQDYVREISGLLLISLEKYQR 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,672,819
Number of Sequences: 59808
Number of extensions: 444346
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)