Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H07
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    35   0.015
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    29   0.96 
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   5.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.1  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   6.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.0  

>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +1

Query: 163 LYSYWRSSCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYREVNPMEQVPSLC---I 333
           LYS+      W+V +AL    + Y+       KG  EQ C E+  +NP  +VP+L     
Sbjct: 6   LYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKG--EQKCKEHLALNPNGRVPTLVDHKN 63

Query: 334 DGHTLIESLNIMHYLEE 384
           + +T+ ES  I+ YL +
Sbjct: 64  NDYTIWESDAILIYLAD 80


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 68  SCLKGQTKPSKXRPLTNLMVPFHPLPWASSQYYTHTGAAHAP 193
           S L  Q  PS   PLT    PF P P A+  +    G+A  P
Sbjct: 268 SNLSKQFSPSGNSPLTEASKPFVPQPSAAGDFRQAKGSASHP 309


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 365 MFNDSIRVCPSMHKDGTCSIGLTSLYSLQCCSPPPLIR 252
           ++ND     P +   G C +G+ S      C PP ++R
Sbjct: 208 VYNDLQGKIPLILDGGACGVGVESTVVNGLCDPPVILR 245


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 202 RIALNLKEIPYDIKAVSLIKGGGEQHCNEYREVN 303
           R+A  L  +P++    SL  G  E   N YRE+N
Sbjct: 336 RLANRLYSMPHEYPNFSLAPGTPESLSNTYRELN 369


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 469 IQPLQNLIVLIYVGEEKKKEWSQHW 543
           IQPL  L + +Y G +KK +  ++W
Sbjct: 71  IQPLSTLALKLYEGLDKKFDGKKNW 95


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 546 HKGLQSYRKVAIDHCRKILC 605
           +K L+ Y+K    HC ++LC
Sbjct: 99  YKMLEKYKKCDFGHCPRVLC 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,362
Number of Sequences: 5004
Number of extensions: 62115
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)