Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H07
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                172   2e-43
SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)                  41   0.001
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               29   3.1  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   4.1  
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score =  172 bits (419), Expect = 2e-43
 Identities = 82/134 (61%), Positives = 98/134 (73%), Gaps = 1/134 (0%)
 Frame = +1

Query: 367 MHYLEETRPQRPLMPQ-DCFKRAKVREICEMIASGIQPLQNLIVLIYVGEEKKKEWSQHW 543
           M YL+ETRP  PL+P+ D  KRA VR+I   IASGIQP+QNL VL YVG +KK EW  +W
Sbjct: 1   MEYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNLKVLQYVGPDKKVEWGHYW 60

Query: 544 ITRGFRAIEKLLSTTAGKYCVGDEITLADCCLVPQVFNARRFHVDLRPFPIILRIDRELE 723
           I RGF+ +EK+L  TAGKYCVGD+IT+AD CLVPQV+NA RF VD+  +P I RI   LE
Sbjct: 61  IDRGFQCLEKMLVQTAGKYCVGDDITMADLCLVPQVYNANRFKVDMSRYPTIARIHEALE 120

Query: 724 NHPAFRAAHPSSXP 765
              AF+ AHPS  P
Sbjct: 121 QVDAFKEAHPSRQP 134


>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
          Length = 238

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +1

Query: 163 LYSYWRSSCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYREVNPMEQVPSLCI-DG 339
           LYS      + R R+ L  K + Y+   ++L K   + +     E NP   VP + + DG
Sbjct: 21  LYSMRFCPYAERPRLVLAAKGVDYECININL-KNKPDWYL---AEPNPRGLVPMIEMPDG 76

Query: 340 HTLIESLNIMHYLEETRPQRPLMPQDCFKRAKVR 441
             L ESL    YL+E  PQ P+ P D F++ + R
Sbjct: 77  RLLPESLLCCEYLDELFPQNPMYPSDAFEKNRQR 110


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 256 IKGGGEQHCNEYREVNPMEQVPSLCIDGHTLIE 354
           ++GGG+QHC+E R    ME+     +   T+I+
Sbjct: 140 VRGGGKQHCDEARLKPAMEEQSRTVLTDGTIIK 172


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 496  LIYVGEEKKKEWSQHWITRGFRAIEKLLSTTAGKYCVGDEITL 624
            +++ G+E      +  IT  ++AI   L+TT    CV D ITL
Sbjct: 916  MVHNGDECPAASQRVTITVNYKAINTQLATTKTSACVNDSITL 958


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/111 (22%), Positives = 47/111 (42%)
 Frame = +1

Query: 298 VNPMEQVPSLCIDGHTLIESLNIMHYLEETRPQRPLMPQDCFKRAKVREICEMIASGIQP 477
           ++P   +P L     T   S  I+ YL  +  +  L   D F+R +V +  ++     + 
Sbjct: 43  LSPFNTLPLLETKEGTFFSSNTIIRYLAASSDK--LYGSDLFQRGQVDQWLDITTCDFEA 100

Query: 478 LQNLIVLIYVGEEKKKEWSQHWITRGFRAIEKLLSTTAGKYCVGDEITLAD 630
               + +   G + +       I +    +EK L+    K+ VGD +T+AD
Sbjct: 101 AVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLA--GRKFLVGDSVTIAD 149


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
 Frame = +1

Query: 163 LYSYWRSSCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYREVNP--MEQVPSL-CI 333
           LYS      + R R+ L  K + Y+   V+L      +   E+ + +P    +VP+L  +
Sbjct: 32  LYSMRFCPFAERPRLVLAAKGLDYECVNVNL------KSKPEWFQTHPDCEGKVPTLETM 85

Query: 334 DGHTLIESLNIMHYLEETRPQRPLMPQDCFKRAKVREICEMIASG 468
           DG  + ES+ I  +LE+   + PL P D + +++ + + +    G
Sbjct: 86  DGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQRFDKG 130


>SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 319 PSLCIDGHTLIESLNIMHYLEET-RPQRPLMPQDCFKRAKVREICEMIASGIQPLQNLIV 495
           PSL   G  L+   NI+   + T RP+R  +P    +R K RE C    +G +  +N + 
Sbjct: 109 PSLYC-GVGLLRQKNILMIRKHTTRPRRKRLPVKIVERFKKREEC---TTGTE-ARNTLA 163

Query: 496 LIYVGEEKKKEWSQHWITRGFRAI 567
            + + ++     S  W  +G+ AI
Sbjct: 164 QLMLNKKPSHSLSVFWQGKGWDAI 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,259,195
Number of Sequences: 59808
Number of extensions: 475477
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)