Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H06
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.48 
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 273  VPLYIHGFTALPDDDWGHCRDPVHPLPGSLHGGNRSRPIQYYIYYDICHRFNN 431
            VP Y   FT       G+  D   P  G    G  ++      YY+IC+R  N
Sbjct: 867  VPFYGQSFTLTK----GNNHDQGVPSAGPGEAGEYTKQPGMLAYYEICNRIRN 915



 Score = 25.0 bits (52), Expect = 0.48
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 351  PGSLHGGNRSRPIQYYIYYDICH 419
            PG    G  +R   +  YY+ICH
Sbjct: 1662 PGPGQAGEYTRAAGFLAYYEICH 1684



 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 176  TASSPIWITLLCTMALTLRPSEVS 105
            T +SP W T       T RP+  S
Sbjct: 1046 TTTSPWWTTTTTRRTTTTRPTTTS 1069


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 339 VHPLPGS--LHGGNRSRPIQYYIYYDICHRFN 428
           V+P  G+  +   NR   I YY++  I  RFN
Sbjct: 213 VYPFEGAREIVDKNRRGEIFYYMHQQIIARFN 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,866
Number of Sequences: 336
Number of extensions: 3085
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)