Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H06
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6572| Best HMM Match : Xan_ur_permease (HMM E-Value=0.17)          126   2e-29
SB_7734| Best HMM Match : CbiM (HMM E-Value=9.8)                      123   9e-29
SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)      123   9e-29
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)    97   7e-21
SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)          31   0.93 
SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.1  
SB_36276| Best HMM Match : Hep_Hag (HMM E-Value=4)                     29   3.7  
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)                    28   4.9  
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)                 28   6.5  
SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)         28   6.5  
SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)                  28   6.5  
SB_1349| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_6572| Best HMM Match : Xan_ur_permease (HMM E-Value=0.17)
          Length = 258

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/120 (48%), Positives = 77/120 (64%)
 Frame = +1

Query: 193 NDVRGEQKPEEARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEE 372
           ND+  E K      G + Y +D+ PPWY C+ +  QHYLTM+G  ++IPFIL   +C   
Sbjct: 17  NDI--ETKKRRKALG-LAYVVDENPPWYACLSLGFQHYLTMLGGTLSIPFILSGPMCFSN 73

Query: 373 TDPDRSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAXKCPDEEI 552
                + ++ST+ FV+G+ T LQ TFG RLPIVQGGT SFL PT AIL+LP  KCP + +
Sbjct: 74  NPLVVAEVLSTIFFVSGISTLLQTTFGVRLPIVQGGTFSFLAPTFAILSLPQFKCPTDTV 133


>SB_7734| Best HMM Match : CbiM (HMM E-Value=9.8)
          Length = 135

 Score =  123 bits (297), Expect = 9e-29
 Identities = 56/112 (50%), Positives = 75/112 (66%)
 Frame = +1

Query: 205 GEQKPEEARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD 384
           G++K ++ R G + Y I++TPPWYLCI +  QHYLTM+GA +A+P  L   +C E  D  
Sbjct: 24  GKRKMKK-RVGGLAYMINETPPWYLCILLGFQHYLTMLGANLAVPLALRKYMCFETNDLA 82

Query: 385 RSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAXKCP 540
            S +I+T+ F +G+ T LQ TFG RLPIVQG T +F+ P  AIL L   KCP
Sbjct: 83  LSEVIATVFFTSGIATLLQTTFGVRLPIVQGSTFTFIAPATAILTLDKFKCP 134


>SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)
          Length = 453

 Score =  123 bits (297), Expect = 9e-29
 Identities = 56/112 (50%), Positives = 75/112 (66%)
 Frame = +1

Query: 205 GEQKPEEARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD 384
           G++K ++ R G + Y I++TPPWYLCI +  QHYLTM+GA +A+P  L   +C E  D  
Sbjct: 65  GKRKMKK-RVGGLAYMINETPPWYLCILLGFQHYLTMLGANLAVPLALRKYMCFETNDLA 123

Query: 385 RSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAXKCP 540
            S +I+T+ F +G+ T LQ TFG RLPIVQG T +F+ P  AIL L   KCP
Sbjct: 124 LSEVIATVFFTSGIATLLQTTFGVRLPIVQGSTFTFIAPATAILTLDKFKCP 175


>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
          Length = 774

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 43/80 (53%), Positives = 56/80 (70%)
 Frame = +1

Query: 301 HYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGLITWLQATFGCRLPIVQGG 480
           HYLTM+G  ++IPF+L   +C        + ++ST+ FV+G+ T LQ TFG RLPIVQGG
Sbjct: 691 HYLTMLGGTLSIPFVLSGPMCFSNNPLVVAEVLSTIFFVSGISTLLQTTFGVRLPIVQGG 750

Query: 481 TISFLVPTLAILNLPAXKCP 540
           T +FL PT AIL+LP  KCP
Sbjct: 751 TFTFLAPTFAILSLPQFKCP 770



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 241 VTYGIDDTPPWYLCIFMALQH 303
           + Y +D+ PPWY C+ +  Q+
Sbjct: 532 LAYVVDENPPWYACLSLGFQN 552


>SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/54 (48%), Positives = 35/54 (64%)
 Frame = +1

Query: 301 HYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGLITWLQATFGCRL 462
           HYLTM G+ VA+P IL   +C + +   +S IIST+ FV+GL T +Q   G RL
Sbjct: 158 HYLTMFGSTVAVPLILAAPMCYDNSPLAKSEIISTIFFVSGLCTLIQTILGNRL 211


>SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
 Frame = +1

Query: 208 EQKPEEARKG-NVTYGIDDTPPWYLCIFMALQ--HYLTMIGAIVAIPFILCPALCMEETD 378
           +Q  +E RK   + Y +D+ PPWY+C+ +  Q    L++    + +  +      +  T+
Sbjct: 70  KQLAKERRKALGLAYAVDENPPWYICLILGFQVAQALSVSNLELFLSIVDVIEGILNFTE 129

Query: 379 PDRSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAXKC 537
             +S     +  +      ++      LPIVQGGT SFL P  AIL+LP  +C
Sbjct: 130 QRKSGPKCALNRLN-----VEIIDNYNLPIVQGGTFSFLAPIFAILSLPKWQC 177


>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 PDRSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVP 501
           P R + + T + V    TWLQ++F   LP+V  G   F VP
Sbjct: 132 PMRMSAVKTRVLVA--YTWLQSSFTAILPLVGWGIYGFQVP 170


>SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)
          Length = 223

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 421 GLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAXKCPDE 546
           G++TW+     C++P V    + F    ++ L L   KCP++
Sbjct: 65  GVVTWIHVRDSCQIPSVARRVVVFDDDNVSDLALQIRKCPED 106


>SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 271 WYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMI 411
           W+  +  AL   LT++G  + I  ILC    +EET P+  +I+S  +
Sbjct: 33  WFW-VLHALISALTVVGNGLVIWVILCKRSLLEETSPNGRSILSLAV 78


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 241 VTYGIDDTPPWYLCIFMALQ 300
           + Y +D+ PPWY C+ +  Q
Sbjct: 41  LAYVVDENPPWYACLSLGFQ 60


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 201  YIIDAHSPDSVQSDLDHVVVYHGIDPTTIRSQSYVWXY-VTETQKPDAS 58
            Y + AHSP  V +DL+ +  +     T ++ Q  V  + VT +Q+ D S
Sbjct: 1314 YGMSAHSPTCVTADLEDLTAFIDYQETQLQMQYKVGAFNVTHSQQRDGS 1362


>SB_36276| Best HMM Match : Hep_Hag (HMM E-Value=4)
          Length = 140

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 388 SNIISTMIFVTGLITWLQATFGCRLPIVQGGTIS 489
           +N I+T     G+ITW     GC   +++G T S
Sbjct: 78  ANAINTETKPVGVITWPVGILGCNTRLIRGSTAS 111


>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
          Length = 1466

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 142 HNNVIQIGLDAVRGVCVNDVRGEQKPEEARKGNVTY 249
           HNN I   L  +RG+CV+  R E   +  R+G V Y
Sbjct: 421 HNNKIS-HLGLIRGLCVHIRRQELATDVPRRGGVPY 455


>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
          Length = 312

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 213 LFTSYIIDAHSPDSVQSDLDHVVVYHGIDPTTIRSQSY 100
           LF++   D    DS+Q +    V+Y G+ PT   SQ+Y
Sbjct: 249 LFSNTEDDYGGKDSLQREKSENVLYEGVKPTGDLSQTY 286


>SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)
          Length = 445

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 208 EQKPEEARKG-NVTYGIDDTPPWYLCIFMALQHYLTMI 318
           E + E+ R    +TY +D+ PPW + +       LT I
Sbjct: 22  EIQAEKRRNAFGLTYAVDENPPWTVALITIFSQMLTNI 59


>SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)
          Length = 560

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +3

Query: 177 QGSVXXXXXXXXXXXXXXXXXXHVRDRRHAALVPLYIHGFTA-LPDDDWGHC 329
           QG+V                    R+R    +V LY H + A   DDD GHC
Sbjct: 145 QGAVATDRETIDDPNTPESRRQEARERNEELIVRLYRHRYRAGRSDDDRGHC 196


>SB_1349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 287 NIQRYQGGVSSIPYVTLPLRASSGFCSPRTSLTHTPLTASSPIWITLLCT 138
           N+Q Y   V + P  ++ L   +  C P  + THTP T  +       CT
Sbjct: 56  NVQTYPQAVHADPIKSVQLCRGNCPCGPIRAYTHTPQTVDADPIKKYTCT 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,874
Number of Sequences: 59808
Number of extensions: 412210
Number of successful extensions: 1129
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)