Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_H06
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical pr... 54 6e-08
Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AF100669-2|AAK39264.1| 546|Caenorhabditis elegans Hypothetical ... 49 3e-06
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81489-10|CAB04004.2| 337|Caenorhabditis elegans Hypothetical p... 30 1.1
AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeri... 28 4.4
AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein, su... 28 4.4
AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alp... 28 4.4
AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s... 28 4.4
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 27 7.6
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 7.6
AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans Na/Ca,K-excha... 27 7.6
>Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical
protein C51E3.6 protein.
Length = 555
Score = 54.4 bits (125), Expect = 6e-08
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +1
Query: 259 DTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD-RSNIISTMIFVTGLITW 435
DTPP + + LQ + + A++ +P I+ ++C + R +IS+ +G+ T
Sbjct: 25 DTPPIGIALLYGLQQVMVCVSALLTVPLIMADSMCPGSSIAVLRQTLISSTFVSSGISTI 84
Query: 436 LQATFGCRLPIVQGGTISFLVPTLAILNLPAXKC 537
+Q FG RL ++QG +++ ++LP C
Sbjct: 85 IQTLFGMRLALLQGTAFAYVPSVQGFMSLPENTC 118
>Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical
protein T07G12.2 protein.
Length = 544
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 235 GNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCM-EETDPDRSNIISTMI 411
G++ + ++D P F LQ L I A++ P+ + LC ET R +I+
Sbjct: 6 GDLHFHVNDVPHKSAIFFFGLQQMLVCISALLVTPYFVSNLLCAGAETTEVRVQLIAATF 65
Query: 412 FVTGLITWLQATFGCRLPIVQGGTISF 492
+G+ T LQ TFG RL I+ G + +F
Sbjct: 66 ISSGIATILQTTFGLRLAILHGPSFAF 92
>AF100669-2|AAK39264.1| 546|Caenorhabditis elegans Hypothetical
protein R11E3.2 protein.
Length = 546
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +1
Query: 223 EARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD-RSNII 399
E ++ + + ++D P + + Q + I ++ IP+++ +C + + + R +I
Sbjct: 3 EEKEDELVHHVNDIPSIPTILLIGFQQMMICISMLLVIPYMMSDMVCPGDKETEIRVQLI 62
Query: 400 STMIFVTGLITWLQATFGCRLPIVQGGTISFL 495
S G+ T LQ TFG RL I+ G + ++L
Sbjct: 63 SASFVTAGIATILQTTFGMRLAILHGPSFAYL 94
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 247 YGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCM-EETDPDRSNIISTMIFVTG 423
+ +++ P + LQ + + +++ IP+++ LC ++ R +IS +G
Sbjct: 6 FHVNEIPSPPSIMLFGLQQMMICLSSLLVIPYVVSDMLCAGDQAMEIRVQLISATFVTSG 65
Query: 424 LITWLQATFGCRLPIVQGGTISFL 495
+ T LQ TFG RL I+ G + +FL
Sbjct: 66 IATILQTTFGMRLSILHGPSFAFL 89
>Z81489-10|CAB04004.2| 337|Caenorhabditis elegans Hypothetical
protein C55A1.8 protein.
Length = 337
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 283 IFMALQHYLTMIGAIVAIPFILCPALCMEETDP 381
I +++ +++ IG + A+P + PA C++ +P
Sbjct: 152 IILSVIYFIIFIGFVAALPHVQAPAACLQALEP 184
>AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 375
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 447 LRLSTANSSRRHHIIPG-ADARDTES 521
LR+STANS RHH P A DTE+
Sbjct: 327 LRISTANSDGRHHCYPHFTCAVDTEN 352
>AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein,
subunit alpha protein 1 protein.
Length = 375
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 447 LRLSTANSSRRHHIIPG-ADARDTES 521
LR+STANS RHH P A DTE+
Sbjct: 327 LRISTANSDGRHHCYPHFTCAVDTEN 352
>AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 375
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 447 LRLSTANSSRRHHIIPG-ADARDTES 521
LR+STANS RHH P A DTE+
Sbjct: 327 LRISTANSDGRHHCYPHFTCAVDTEN 352
>AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s)
subunit protein.
Length = 375
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 447 LRLSTANSSRRHHIIPG-ADARDTES 521
LR+STANS RHH P A DTE+
Sbjct: 327 LRISTANSDGRHHCYPHFTCAVDTEN 352
>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 204 SYIIDAHSPDSVQSDLDHVVVYHGIDPTTIRSQSYV 97
S ++D +PD D D V H I TI++ SY+
Sbjct: 127 SVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDSYL 162
>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 204 SYIIDAHSPDSVQSDLDHVVVYHGIDPTTIRSQSYV 97
S ++D +PD D D V H I TI++ SY+
Sbjct: 127 SVVMDPRAPDFRSMDSDIQVAEHNITMRTIKNDSYL 162
>Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical
protein F35C12.2a protein.
Length = 596
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 188 HTPLTASSPIWITLLCTMALTLRP 117
+TP+ AS P W TLL T +L P
Sbjct: 53 NTPVNASKPFWKTLLPTCNRSLAP 76
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 595 SSTPAAVXRYSWRPRSPHQDTXRPADSVSRASA 497
+S+P A R R RSP Q RP+ +V S+
Sbjct: 405 TSSPTAENRQCHRSRSPEQSNFRPSQTVPGLSS 437
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 553 RSPHQDTXRPADSVSRASAPGMIW 482
R+PH T P+ R S+PGM+W
Sbjct: 146 RTPHGST--PSTGTPRLSSPGMVW 167
>AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans
Na/Ca,K-exchanger protein.
Length = 596
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 188 HTPLTASSPIWITLLCTMALTLRP 117
+TP+ AS P W TLL T +L P
Sbjct: 53 NTPVNASKPFWKTLLPTCNRSLAP 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,594
Number of Sequences: 27780
Number of extensions: 285202
Number of successful extensions: 789
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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