Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H06
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.9  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   6.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   6.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 373 FPPCREPGRG*TGSRQWPQS 314
           F P R PG G  G R +P+S
Sbjct: 52  FEPRRNPGPGSKGPRDFPRS 71


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -2

Query: 486 YGAALNYWQSTAEGRLKPGY*TCDKYHSRYNIGSV 382
           YG  +  W+     R+   Y   D     YNIG +
Sbjct: 215 YGLIVYSWEQNRSWRITHSYFMPDPLAGDYNIGGL 249


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 295 LQHYLTMIGAIVAIPFILCPALCMEETD 378
           + +  + +G I+ I  + C  LC E+ +
Sbjct: 1   MHNICSRLGRILLISAVFCVGLCSEDEE 28


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 160 IGLDAVRGV---CVNDVRGEQKPEEARK 234
           +G   VRG     +NDV+ E  PE+  K
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPEDINK 86


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 160 IGLDAVRGV---CVNDVRGEQKPEEARK 234
           +G   VRG     +NDV+ E  PE+  K
Sbjct: 60  MGFQGVRGKKNSIINDVKNELFPEDINK 87


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 160 IGLDAVRGV---CVNDVRGEQKPEEARK 234
           +G   VRG     +NDV+ E  PE+  K
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPEDINK 86


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 160 IGLDAVRGV---CVNDVRGEQKPEEARK 234
           +G   VRG     +NDV+ E  PE+  K
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPEDINK 86


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 547 PHQDTXRPADSVSRASA 497
           PHQD+  PAD     SA
Sbjct: 501 PHQDSATPADQPLDLSA 517


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 299 CKAMNIQRYQGGVSSI 252
           CKA N + Y+GG  ++
Sbjct: 565 CKATNEETYRGGKGAL 580


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 299 CKAMNIQRYQGGVSSI 252
           CKA N + Y+GG  ++
Sbjct: 565 CKATNEETYRGGKGAL 580


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 299 CKAMNIQRYQGGVSSI 252
           CKA N + Y+GG  ++
Sbjct: 565 CKATNEETYRGGKGAL 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,338
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)